Bneb029834.1
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- -
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000014.1:1452285-1454738[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.09 2.3e+02 3.4 0.0 21 43 87 109 79 115 0.89 2 10 2 5.1e+03 -0.9 0.0 21 47 116 142 110 149 0.76 3 10 3 7.7e+03 -1.5 0.1 21 32 144 155 130 170 0.76 4 10 0.0016 4.2 9.0 0.0 21 48 172 198 164 204 0.85 5 10 0.11 2.8e+02 3.1 0.1 23 43 202 222 196 228 0.88 6 10 0.027 69 5.1 0.1 20 43 231 254 222 258 0.82 7 10 0.031 79 4.9 0.0 17 47 259 289 255 296 0.82 8 10 1.7 4.3e+03 -0.7 0.1 16 44 343 371 337 380 0.80 9 10 2.4 6.2e+03 -1.2 0.0 15 40 369 395 360 405 0.63 10 10 0.01 27 6.4 0.0 14 45 425 453 414 457 0.79
Sequence Information
- Coding Sequence
- atggacgcTGAAAATAATATCTTTGAGCCAGTGATTAAAATAGAAGAAGAAAATTCATCAGATGTCAATCCAGTTTTCGTAAGCGTAAACGAAATCAAATCAGACTCTGAAGACTCTAGTTTCTCTGATTGGCTTGAAACACACAACAAAGtgaaaaataatagtatagTTAAGTCGAAGAAATCATTTGAATGTAGTACGTGCTTCAAAAAATTTAGTTCCGCCTACTACTTAAGAGATCACGAAAAAGTCCACGCTGGCGAGAGTCCGTTCGAATGTAGCCTGTGTTTGGAAACATTCAGGTCTTCCCACTTTTTGAAACAGCACGAAAGAATCCATACTGGCGAAGAAAATCCATTCAAATGCACCAAATGTTTCAAAACGTTCAGTTCACCGCAATATTTGAAGCAACACGAAAGAGTCCATACCGGTGAGAAGCCGTTCGTATGCAGTGTCTGTTCGAAATCGTTTGTTTCGTTACAATATCTAAAACATCACGAGAAAACTCAcagcggtgaaaaaccatttcaGTGCACAGTGTGTCCAAAAATGTTTACCCAAGTGGGAAATTTGAAACGTCACGAGATAACGCATGCGCAAAAAATGCCACTTAAGTGTAACGTGTGTTTTAAAGTGTTTAGTCACGCGGGACTCTTACGGAAACATGAGAGATCTCATGCGAGGACTCACGCgagtgaaaaaattattaagtgtaatatttgttttaaaatattcaatcaTCCCACTGTATTACGAAAACATCAGAAAACTCACGCGTCGAACGAATCAGAAACCGGCTTCAAATGTGATGTGTGCCAAAAAGTGTTTTCGAACGtgggaaatttgaaaaaacacGCAGTGATGCATTCCGATGAAAAACCGTATCTGTGTTCATTTTgttcgaaaaaattttccacagcAGGACACCTGAAGTGTCACGAACAGATACATAGTGACCGGAAATTAACATTTGAGTGTGacgtttgttttaaaaaatttacacagTTAGGTTTCTTAAAAAATCACCAGAGTACGCACAATAGCGAAAAATTATGTGCGTGTACACTGTGTGGGGAAAAATTTAATCACGCGGGAAAATTAAAGAAGCATGAACGAAGTGCACATAGCCAGGGGCCATTTAATTGCGCGACGTGTTCGAAAAGTTTTAATGTGTTGGGAAATTTGAAGATACACGAACGTGTTCATCGTGACGATGAACAGTTGtttaagtgtgatgtgtgttcGAGAACGTTCACGCAATTAGGCGGTTTCAAGACGCATATGAAAATTCATAGTGAAAAACCGGTTCAGTGTGATGTGTGTTTGAAAATGTTTCGAAATTTAAAGATTCATATGAAAATTCATAGCAGTGATGAAAAATCGGTTGAATGTACTTCATCTAAACGATCTACTTCAACTGCTCTGTTTGAATTTTacgaatatttatcaaaagcgTTAGATAACGGACTATCTGTGTTTGGATTGTTCTTTGACCTGAGTGCAGCTTTCGATACGGTCAATCACGGTTATCTTCTGAAGAAACTGGAAGCCATGGGAATCCGAGGAAATATTAATGATTTGGTAAAATCATACTTAAGTAATCGAAAATATGTAGTCGAAATTCAAGGACAACAGTCAGTAGAAAAATACATCAATATTGGAGTACCACAAGGCAGTAATCTTGGACCTctgatttttatttgttttattaatgacCTACCAGAACATGTAGTAGatgcaaaattaataatttatgctGATGATGTTACTGCACTTATAGCCGACTCTAATTATGAAGATGCAAAAAAATCGGTAACAAAGGTGCTAAAAATGTTTCAAGAGTGGTGTTATAGGAATCAGTTAATTGTAAATTTGCAAAAGTCGGCACTGGTGACTTAA
- Protein Sequence
- MDAENNIFEPVIKIEEENSSDVNPVFVSVNEIKSDSEDSSFSDWLETHNKVKNNSIVKSKKSFECSTCFKKFSSAYYLRDHEKVHAGESPFECSLCLETFRSSHFLKQHERIHTGEENPFKCTKCFKTFSSPQYLKQHERVHTGEKPFVCSVCSKSFVSLQYLKHHEKTHSGEKPFQCTVCPKMFTQVGNLKRHEITHAQKMPLKCNVCFKVFSHAGLLRKHERSHARTHASEKIIKCNICFKIFNHPTVLRKHQKTHASNESETGFKCDVCQKVFSNVGNLKKHAVMHSDEKPYLCSFCSKKFSTAGHLKCHEQIHSDRKLTFECDVCFKKFTQLGFLKNHQSTHNSEKLCACTLCGEKFNHAGKLKKHERSAHSQGPFNCATCSKSFNVLGNLKIHERVHRDDEQLFKCDVCSRTFTQLGGFKTHMKIHSEKPVQCDVCLKMFRNLKIHMKIHSSDEKSVECTSSKRSTSTALFEFYEYLSKALDNGLSVFGLFFDLSAAFDTVNHGYLLKKLEAMGIRGNINDLVKSYLSNRKYVVEIQGQQSVEKYINIGVPQGSNLGPLIFICFINDLPEHVVDAKLIIYADDVTALIADSNYEDAKKSVTKVLKMFQEWCYRNQLIVNLQKSALVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00239540;
- 90% Identity
- iTF_00239540;
- 80% Identity
- iTF_00239540;