Bneb029226.1
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- Rsf1
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000012.1:12477728-12482862[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.01 27 6.4 0.0 24 44 214 234 210 238 0.86 2 4 0.0017 4.3 8.9 0.0 20 48 238 266 234 270 0.85 3 4 0.068 1.7e+02 3.8 0.0 21 44 267 290 264 295 0.90 4 4 0.0019 4.9 8.7 0.1 21 52 295 326 284 327 0.85
Sequence Information
- Coding Sequence
- ATGGGCGACTACAACAAAGGTACGCGCGTGTTCGTCGGCAATCTGGGCGACAGCATCAAGAAGGAGGATCTTGAATCAGAATTCACAAAATATGGCAAACTGAATTCCGTGTGGGTGGCATTTAACCCGCCCGGCTTCGCGTTCATCGAATTCGTCAATCACGACGAGGCGGAAAAAGCGTGCGACAGTTTAAATGGAACGGAAATAATGGGCTCGAAATTGCGCGTAGAAATAGCCAGGGGCAAACGTTCAAGTCGAGGTGGCGGCGGCCGAAGAGGTGGGCGGGGCGGTAGAGGATTCTCGCGCGGCGGTGGACCTGGACGTAGCGGTGGATACCGGGACCGTGGAGGTGGCTATCGTGGCAGCCGGGGCGGCAGTAGCAGCCGTGGTCGTGGACGGTACGATGACTACGGTAGAAGCCAGGGTGGCTACAGTAGAGAACGTAGTCGTGACGGGGGTCGCAGCTACGGGGGTGGAAGTCGTGACGGCGGGTACGGAGGTGGCGGCCGAGGACGAAGTGGTGGATACAGCGATGGAGGTTCCAGATATAGGTCAAGATCTCCAGTTGCTAGAGGAAGATCATTTTCGCAATTAAGTCATTTGAAAACGCACGAAAACATTATTCATATTGGTGAAAAACAATTCGAATGTGATATatgcttgaaaaaattttcccaggCGGGCAATTTGAAGCGACACAATTCAATTCATACGAGTGAAAAGTGTTTTAAATGTCGTCTATGTTTTAAAACGTTTGTGgattcgagtaatttaaagaaaCATGTAAGAATTCACACGGGCGAGAAGCCATTCAAGTGTTCGGTATGTGCTAAAACATTCTCGCATTCGGGCACTCTAACGAGACACGCACGAATTCATACCGGCGAAAAGCCATTCAAATGTCAAACATGTCTGAAGATGTTTCGTTACGTAAGCAATCTGCGGTATCATGAAAAACTTCATGCtgatgaaaaaccatacaatTCGTCCCGTTAA
- Protein Sequence
- MGDYNKGTRVFVGNLGDSIKKEDLESEFTKYGKLNSVWVAFNPPGFAFIEFVNHDEAEKACDSLNGTEIMGSKLRVEIARGKRSSRGGGGRRGGRGGRGFSRGGGPGRSGGYRDRGGGYRGSRGGSSSRGRGRYDDYGRSQGGYSRERSRDGGRSYGGGSRDGGYGGGGRGRSGGYSDGGSRYRSRSPVARGRSFSQLSHLKTHENIIHIGEKQFECDICLKKFSQAGNLKRHNSIHTSEKCFKCRLCFKTFVDSSNLKKHVRIHTGEKPFKCSVCAKTFSHSGTLTRHARIHTGEKPFKCQTCLKMFRYVSNLRYHEKLHADEKPYNSSR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00239913;
- 90% Identity
- iTF_00239913;
- 80% Identity
- iTF_00239913;