Basic Information

Insect: Brachynemurus nebulosus
Gene Symbol: -
Assembly: GCA_035578155.1
Location: JAPWDM010000003.1:73717207-73722895[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 1.4 3.6e+03 -0.4 0.0 27 43 92 108 89 114 0.86

2 10 0.039 1e+02 4.5 0.0 21 43 114 136 110 141 0.90

3 10 0.013 32 6.1 0.1 21 44 142 165 137 169 0.88

4 10 0.016 41 5.8 0.2 21 44 170 193 165 196 0.90

5 10 0.0011 2.8 9.5 0.0 21 43 198 220 193 225 0.88

6 10 0.031 80 4.9 0.1 11 45 243 278 234 282 0.82

7 10 2.1 5.3e+03 -1.0 0.1 24 43 285 304 280 309 0.79

8 10 0.037 95 4.6 0.1 20 46 337 363 318 369 0.78

9 10 0.13 3.3e+02 2.9 0.0 21 43 366 388 362 393 0.89

10 10 0.025 64 5.2 0.3 21 50 394 423 388 426 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	1.4	3.6e+03	-0.4	0.0	27	43	92	108	89	114	0.86
2	10	0.039	1e+02	4.5	0.0	21	43	114	136	110	141	0.90
3	10	0.013	32	6.1	0.1	21	44	142	165	137	169	0.88
4	10	0.016	41	5.8	0.2	21	44	170	193	165	196	0.90
5	10	0.0011	2.8	9.5	0.0	21	43	198	220	193	225	0.88
6	10	0.031	80	4.9	0.1	11	45	243	278	234	282	0.82
7	10	2.1	5.3e+03	-1.0	0.1	24	43	285	304	280	309	0.79
8	10	0.037	95	4.6	0.1	20	46	337	363	318	369	0.78
9	10	0.13	3.3e+02	2.9	0.0	21	43	366	388	362	393	0.89
10	10	0.025	64	5.2	0.3	21	50	394	423	388	426	0.89

Sequence Information

Coding Sequence: atgaatGAAATCTCAgaagcaaaaacaaaaattgaagaaattgacgATCCTGAAAATAAATTACCGGAAGCCAATCATCTTGAACCAGAAGTTATTATTAAATCAGAACCCGTCAATGAAGACCAAATTGAAGAACAGGATAATCACTACTCTTTATATCCTGAATTTCAGATTAAAAACGAAAATCCAGCCAATAAACTTGAACGTGTCGTAGTTAAAACCGAAGTATCAACAGAACAtggtaaaaatggaaaaatcatcaaaatatatcaGTGTAacgtatgttttaaaacattttcaaaaaattgcaatttaaaaacGCACGAAATGACACACACTGGAGAAAAACCGTTTAAATGTGATATTTGCGAGAACACATTCCGTTATAGTAGTAGTTTAAAAGTGCACGAGCGTACTCATACTGGAGAAAAACCGTTTCAGTGTCAcgtgtgtaaaaaaatttttcgacacAGTAACACGTTAAAAGTTCACGCGAGAATTCACACCGGTGAAACACCGTTTCAGTGTACCATTTGTCAACGGACATTTTCACAGTCGAATAAATTGAAAACACATTTTCGTAGTCACACGGGCGAAAAACCGTATAAGTGTGAAATATGTGGCAAAGCGTTTCGACTTTCGAGTAATTTGCGAGTCCATCGTATTACACACACTGGTGAAAAACGATATCATTGCCGTctctgtaaaaaatcatttagtCAAGTGGGTACACTGCGTGACCATGAACGAAGTCACACCAATAAAACACCATATAAATGTGAAATTTGTGAAAAACCATTTCAAAAAATCGCAAATCTTCGTCTACACATAAAAACGCACACCGGTGATCTCCCGTTTCAGTGTAGTTATTGTTACAAGGCGTTTTCACAACGAGCGAAACTTGTAGTGCATGAAAAAACGCATTTGGACGATCATCCGTTCGAGTGCACCAagtgcaataaaaaatttaaacacaaaCGAAGTCTAGACGTGCATAGCGCTTTACACACCGGCGAAAATCCATACCAGTGCGCaatttgtgaaaaaatattGGCTAGTTTTAGTAATTTAAAGGCACATGAACGAATTCACACGGGGGAAAAACCGTTTCAGTGTGCGACATGTAATAAGATGTTTTCACAATCGACAAAATTAAAAGTGCACGAACGAATACATACCGGGGAACGGCCCTATCAGTGTTCTCTGTGTCAAAAAACATTTCGAGATAATCGTAGTGTTACAATACACTTGAAGTCGGTTCATAAAGTAAAGAGTAAATCGAACAAACCAGTTGACCCGTCTGGCGGAATGGGAGCAGGATCTTCCAATAGTTGTAGCGGGACTAATGGGAGTATTCCATCAAATAATATTCTCAAACCAAGAATTAGGAAATCATTATCGGTTGATTCAACTAAGATAGTTAAGAAAAAATCATCTTTGTCAGTCGCAAAGAGGAGAACATCAATAACGAAGAAAATCATAATCCaaacaaataatacaaattttccaAAAGACTACAATACGGCGAGTCGTATTCCAAGAAAAAAACGTAATAAAGTTCCATCAAGTTCATTACCAAATTTAAAGCAAAAACATGAGCTACAGACACCAAAAATGAATGCTATACAGAATAGTTCATTAAATTCGGAATTTCAAGAGAAAACATTGCAATATGAATCATCCAAAAAATGTACCGATGTAAATTTCAATGAAAATATAGAACAATTGGGTCAATCTGTTCTTCAAGATCTTAGAGAAATTGAAATAATGAATCCTGAGATGAGTATCAAAATGGAAGTTCTGGAAAGGAAGATTCTTTTAATGGTTAAATTAGCAACCGGCAAAGGAGACGTTGGTGACGCCGAATCAAAAATACAGACGGCTGTGATGTCACCTCACACGTTATTGTCAggaaatttattagaaataccaaaaattgttgtaactacACCTCGTGgaacaaataaacattaa
Protein Sequence: MNEISEAKTKIEEIDDPENKLPEANHLEPEVIIKSEPVNEDQIEEQDNHYSLYPEFQIKNENPANKLERVVVKTEVSTEHGKNGKIIKIYQCNVCFKTFSKNCNLKTHEMTHTGEKPFKCDICENTFRYSSSLKVHERTHTGEKPFQCHVCKKIFRHSNTLKVHARIHTGETPFQCTICQRTFSQSNKLKTHFRSHTGEKPYKCEICGKAFRLSSNLRVHRITHTGEKRYHCRLCKKSFSQVGTLRDHERSHTNKTPYKCEICEKPFQKIANLRLHIKTHTGDLPFQCSYCYKAFSQRAKLVVHEKTHLDDHPFECTKCNKKFKHKRSLDVHSALHTGENPYQCAICEKILASFSNLKAHERIHTGEKPFQCATCNKMFSQSTKLKVHERIHTGERPYQCSLCQKTFRDNRSVTIHLKSVHKVKSKSNKPVDPSGGMGAGSSNSCSGTNGSIPSNNILKPRIRKSLSVDSTKIVKKKSSLSVAKRRTSITKKIIIQTNNTNFPKDYNTASRIPRKKRNKVPSSSLPNLKQKHELQTPKMNAIQNSSLNSEFQEKTLQYESSKKCTDVNFNENIEQLGQSVLQDLREIEIMNPEMSIKMEVLERKILLMVKLATGKGDVGDAESKIQTAVMSPHTLLSGNLLEIPKIVVTTPRGTNKH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00239523;
90% Identity: iTF_00239523;
80% Identity: iTF_00239523;