Bneb025756.1
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- -
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000008.1:22288533-22289774[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 1.8 4.6e+03 -0.8 0.0 22 43 185 206 177 210 0.84 2 7 0.0027 6.9 8.3 0.0 21 43 212 234 206 242 0.89 3 7 0.018 47 5.6 0.1 21 44 268 291 260 295 0.88 4 7 0.0056 14 7.3 0.3 21 47 296 322 293 327 0.85 5 7 0.089 2.3e+02 3.4 0.1 21 43 324 346 319 350 0.90 6 7 0.00052 1.3 10.6 0.1 21 47 352 377 347 382 0.87 7 7 0.0017 4.4 8.9 0.2 22 49 381 407 378 410 0.81
Sequence Information
- Coding Sequence
- ATGGAACATAAAGATATTTCGTTAGAAACAAATGATGAAGTTCTACCCAAAATAAAAGTGGAAGCATATGATTCTGACGATGAAAATTTAACCATTGCAGAAAGAAAGACAGAAACTCAAGTTACGGAGTTGATATCAGTTCCATTTTCGGTTAAAATGAAACATGAAGAGATTTCGTCAGAAACAAATGATgaagttttaaacaaaataaaagtggaAACATGTGATTCTGAAGATGAAAATCTAACAATTCCAgtagaaaataagaaaatgaaaaatgaacaGATTACAGAGTTTAAATCGGTTCCTGGGACATTTATTGCTATTAATGAAGCCAAAATAAAAGTGGAAACATGTGATTCTGTAGATGAAAATGAGGACCAACACCCAAGTGACTTGAATAGTTTACATACTGAAATTAAAATCGAAGCCGGCAAAAATTTGGAACATGACATGGCCCATtgcaacaaaagaaaatataaatgtaatacaTGTTCCCGAAACTTTTCCAAGTCAAGTGATTTAATTAAACATGTACGAATTCATGCGCGTGAAAAAACATTCAAATgtaatacatgttttaaaacattttccgacacgaataatttaaaaattcatgaaagaGTACACACCGGAGAAAAACCGTTCAAATGCCacgtatgttctaaaacattttcacagtcaAGTAATTTGAAAACGCACGAAGCCATACATACCGGTGAAAAATCGTTCAAATGTCAAACATGTGCGAAAACATTTGTTAAAAAGTACGATTTACAAAAACATGAACGAATACATACCGGGGAAAAACCGTACAAATGTAAagtgtgttttaaaacattttgccAGTTTGGCTCTTTGCAAAGACATGAACGAATACATACCGGCGAAAAACCCTAcaaatgtaatgtatgttcgaaaacattttcGCAATCGTGTAGTTTACGAACACACGAAAGAATACATAGAGGGGAAAAACCGTACAATTGTAATATGTGCAGTAAAACATTTTCCGATTCAAGTACTTTAAGAAATCATGAACGAACACATACCGGCGAAAAACCATTCCGGTGTCAagtatgttcgaaaacattttcGCAGTCGGGTAATTTGAGAACGCATGAATTAATTCATAAAGgtgaaaaatcattaaaatgtcAAATATGCTTTAAAACGTTTAGTCAGTATGCAAATTTACAACGCCATCAAATAATTCATACGGCAAAAATTATTCACATGTAA
- Protein Sequence
- MEHKDISLETNDEVLPKIKVEAYDSDDENLTIAERKTETQVTELISVPFSVKMKHEEISSETNDEVLNKIKVETCDSEDENLTIPVENKKMKNEQITEFKSVPGTFIAINEAKIKVETCDSVDENEDQHPSDLNSLHTEIKIEAGKNLEHDMAHCNKRKYKCNTCSRNFSKSSDLIKHVRIHAREKTFKCNTCFKTFSDTNNLKIHERVHTGEKPFKCHVCSKTFSQSSNLKTHEAIHTGEKSFKCQTCAKTFVKKYDLQKHERIHTGEKPYKCKVCFKTFCQFGSLQRHERIHTGEKPYKCNVCSKTFSQSCSLRTHERIHRGEKPYNCNMCSKTFSDSSTLRNHERTHTGEKPFRCQVCSKTFSQSGNLRTHELIHKGEKSLKCQICFKTFSQYANLQRHQIIHTAKIIHM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00239556;
- 90% Identity
- iTF_00239556;
- 80% Identity
- iTF_00239556;