Bneb017959.1
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- -
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000005.1:8832525-8833832[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.095 2.4e+02 3.3 0.0 21 44 119 142 112 147 0.88 2 9 0.0072 18 6.9 0.0 20 43 148 171 143 176 0.87 3 9 0.0082 21 6.7 0.1 21 47 177 203 173 208 0.86 4 9 0.032 81 4.8 0.0 21 44 205 228 201 235 0.89 5 9 0.13 3.3e+02 2.9 0.2 25 50 237 261 228 263 0.84 6 9 0.024 61 5.2 0.1 21 45 289 313 278 321 0.84 7 9 0.0096 25 6.5 0.9 5 49 328 372 324 376 0.85 8 9 0.13 3.3e+02 2.9 0.0 26 43 382 399 379 404 0.89 9 9 0.0062 16 7.1 0.0 22 45 406 429 400 432 0.90
Sequence Information
- Coding Sequence
- ATGAAAGTTGAATCGTTTGAGTTTAcagaaatgaaatttaattcaaCTGATATAAAAACTGAACCAACTGAAGTAATAACAGTTGACCGACAAGAAACGCAAGAAACAAAAGTTGAATCAGTAGAAATAAAAGTCGAAACTGATCAAAGTCAATGTTTGCAAGAAAAAAGCGAAACTTTAACAGATGCTAAAAATCTGCAAGtggaatttaaaattgaaccaGACGACACGGTCCAAAGTTTTACAGATACTGCAATAAAAACATCAGAAAAAGAATCCTTAAAATGTGACAcatgtttaaaaacattttcgttaaaaaatgaCTTAGAACAACACCAAAGACTAATTCACATTGacgaaaaaccatttaaatgtaatgTTTGTTTCAAAACGTTCAGTTTGGTAAACACTTTAAAACGTCATGAACGGATTCACCAAGaaacaagtgaaaaatcatatttgtgtaatatatgttttaaagtTTTCACACAGGCCAGCCATTTAACAGAACACGAAAAAATCCATACCGGCGAAAAACCATTTCGGTGCGAAATATGCGCAAAACAATTCCACAATTTGCGTGACTTAAAACGACATGGTAAAATTCACACTGGTGAAAAACCGTTCCAGTGTAATGTgtgtttcaaaacattttcgCAAGCAGGTCATCTAAAAGAGCATCAACGAATTCACACCgatgaaaaattatatcagTGTGAAATCTGTTTGaaacaattcaattttataaacaatttaaaacgaCACAAATTAAAGCACACCGCTGAAAAACTGTATCGATGTTGTACATGTTATAAAACGTTTAGTTTAATCGGTGGTTTAAAACAacacgaaaaaattcataccggtgaaaaaccgtatcagtgtgacatatgttttaaaacattcactCAAATAAGTCACCTAAAAGTGCATGAACGAGTTcataccggtgaaaaaccatttcaGTGTAACACATGTTCGAAAGCTTTTCATTGTATCGGTAATTTAAAAACTCATGAAAGGATACATAGCGGTGAAAAACCGTTTAAATGTAATGCATGTACGAAAACGTTCAGTTGCGTTAGTAATTTAAAGCGTCATGAGAAAAAACATTATTCCGCTGAGAAATTAGTGCCATTAGTGCGTTGtgatatttgttttaaatcatttagTAGTTTTAGTAATTTGAAACGGCATCAGATGCAACATACTGGTGATAAACCATTTCGATGTGATAcgtgtactaaaacatttaatcagttaagtaatttaaaacgACATTTGAAAAGTCACAGtgatgaaaaataa
- Protein Sequence
- MKVESFEFTEMKFNSTDIKTEPTEVITVDRQETQETKVESVEIKVETDQSQCLQEKSETLTDAKNLQVEFKIEPDDTVQSFTDTAIKTSEKESLKCDTCLKTFSLKNDLEQHQRLIHIDEKPFKCNVCFKTFSLVNTLKRHERIHQETSEKSYLCNICFKVFTQASHLTEHEKIHTGEKPFRCEICAKQFHNLRDLKRHGKIHTGEKPFQCNVCFKTFSQAGHLKEHQRIHTDEKLYQCEICLKQFNFINNLKRHKLKHTAEKLYRCCTCYKTFSLIGGLKQHEKIHTGEKPYQCDICFKTFTQISHLKVHERVHTGEKPFQCNTCSKAFHCIGNLKTHERIHSGEKPFKCNACTKTFSCVSNLKRHEKKHYSAEKLVPLVRCDICFKSFSSFSNLKRHQMQHTGDKPFRCDTCTKTFNQLSNLKRHLKSHSDEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00239568;
- 90% Identity
- iTF_00239568;
- 80% Identity
- iTF_00239568;