Bneb017818.1
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- -
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000005.1:3026654-3027757[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.015 39 5.9 0.0 19 46 125 152 110 159 0.76 2 7 0.0063 16 7.1 0.1 22 46 183 206 171 212 0.86 3 7 0.5 1.3e+03 1.0 0.0 26 43 215 232 208 237 0.86 4 7 0.00097 2.5 9.7 0.0 21 48 238 265 233 269 0.86 5 7 0.015 38 5.9 0.0 21 46 266 291 263 298 0.85 6 7 0.12 3.1e+02 3.0 0.0 21 48 294 320 291 322 0.87 7 7 0.00043 1.1 10.8 0.0 21 43 322 344 320 354 0.90
Sequence Information
- Coding Sequence
- atggaaaataaagagTGTACATCAACTGATAATATATTTCCCGTTAAAATAAAGCAAGAAGAAAATTTAGAAGAATTTGATAACTCATTTCCAGATGTAACAAAGACGGAGTTATCTGATcctttaaatcaaaataaaataaaattggaaaaattcgATGACGATTTACCAAGTTTACATACCGTTTACATACCAGTTAAATCAGAAATTGACGAAAATAATTTGTCAAGAGAAAACAGTGACTTGAATGAATGTTGCCAAAATTTCAGTGAGTCAAAAGTATCTACAAATTGTTCCGAACAATTTAGGCCAGCGGAAAATAGTGCATGTTCTGAAACCGGGCCAGGTAGTTCACAGAATTATGAAACAGCTCAGACCAGTGataaaccattcaagtgtgatacatgtttaAAAGCGTTTTCTACGTCAAgccatttaaaaagacatgaagcGGTACACACTGGTggaaaaccattcaagtgtagtacttgtttgaaaacattttcactGCCGCACCATTTGAAGAAACATGAAACAATTCATACAAAAGAACCATTTAAATGTTCAAcctgttttgaaatatttcccACGTCGAGTCGTTTAAGAAGACACGAAATGACACACACTGGCGAACGGCTATTCAAATGTGACACgtgtttcaaaacattttccACATCGACGCATTTAAAACGACACGAAACAACACacaccggtgaaaaaccattcaaatgtgatacatgttttaaaacattttcacagtcaCATCATTTGAAGAAACATTTCCGTATTCACACCGGTGAAAAACCGTTCCAATGTGACACGTGTTTTGAAACATTTTCAGCGTCGAGCAGTTTAAAGCGTCACGAGACAATACATACCGGCGAGAAACCGTTTAAGTGTAATACATGTCTGAAAACATTTTCGGTGTTGagcaatttaaaaagacatgaattaGTGCATACCGGTGAAAGACCATTCacgtgtaatatatgttttaaatcgTTTTCAACGTCAAGCAATCTAAAAGTGCATGAACGGACACATAATTCGGGTGAAAAACCGGTTGACTGTGAtatgaatgttttaaaacattttctcagttaa
- Protein Sequence
- MENKECTSTDNIFPVKIKQEENLEEFDNSFPDVTKTELSDPLNQNKIKLEKFDDDLPSLHTVYIPVKSEIDENNLSRENSDLNECCQNFSESKVSTNCSEQFRPAENSACSETGPGSSQNYETAQTSDKPFKCDTCLKAFSTSSHLKRHEAVHTGGKPFKCSTCLKTFSLPHHLKKHETIHTKEPFKCSTCFEIFPTSSRLRRHEMTHTGERLFKCDTCFKTFSTSTHLKRHETTHTGEKPFKCDTCFKTFSQSHHLKKHFRIHTGEKPFQCDTCFETFSASSSLKRHETIHTGEKPFKCNTCLKTFSVLSNLKRHELVHTGERPFTCNICFKSFSTSSNLKVHERTHNSGEKPVDCDMNVLKHFLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00239695;
- 90% Identity
- iTF_00239695;
- 80% Identity
- iTF_00239695;