Bneb019444.1
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- -
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000005.1:54246471-54247811[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 8 2e+04 -2.8 0.0 24 30 113 119 104 123 0.72 2 9 4.5e-06 0.012 17.1 0.1 18 52 133 168 127 170 0.84 3 9 0.013 33 6.1 0.1 13 43 166 195 163 201 0.82 4 9 0.0024 6.1 8.4 0.0 21 45 201 225 196 228 0.90 5 9 0.0015 4 9.0 0.1 21 45 229 253 226 262 0.89 6 9 0.13 3.4e+02 2.8 0.0 12 31 266 285 258 301 0.81 7 9 0.00084 2.1 9.9 0.1 21 46 358 383 355 389 0.87 8 9 0.33 8.4e+02 1.6 0.1 21 45 386 410 381 413 0.81 9 9 0.094 2.4e+02 3.3 0.0 21 43 414 436 409 440 0.82
Sequence Information
- Coding Sequence
- atgttttttaaggtaTGTGAAAACGACGGCTTTCCCTCTCAAATTTGTAAAGAATGTCTGAGTCAGTTGGATCAAACGTATAAATTTCGAAAGTTATGTGAATATTCCGCTGCAATATTACtttcaaatagttttaaagttgCAATTGCTGAATCTCGAGAAgaaaatattgtgaaaaatgAAAGTGATAATGAAGATATTTCTAGTAATCCAACAAGTGCTGGTGAAACAGATAATTcagtaaaaacaaaaactagATTTAGCAAGCGTAAACGAAtcgaaacaaaatcaaattttaccGACCAAATAAAAAAGACGCGACATCCCATGAAACGTGACTACACGTGTGAGATCTGCTcgaaaaatttcacattttctCAACTGAAAATTCACATGCGATCTCACACAAATGAAAAACCGTTAACCTGCGATATTTGCGGTCAACAATTTACCTTCAACTGTAACCTTCGACGACACTTAATGTTACACACCGGCGAAAAACCGAAAACGCACATCAACAAGAAATCATTCACGTGTGAAATATGCGGACAAAAATTTAGCTTCAACTGTAATTTACGTCGCCACAAAATGACCCATACCGGGGAAAGGCCATTTAAATGTTCAATTTGTAAAAAAGGATTCATCCAATCGAACAATTTAGCCAATCATATGCGAGTACATACCGGTGAGGAGCCGTACGTTTGCAATGTGTGCGGGAAAGGTTTCCGACAAGCCGAACGTTTACGGTATCATCTTCATAAACATCAAAATGCCGGCGAAAAAGTACGCGTGAATACGaataaaaagacaataaattcaaattcaaaacaaattcaCGCATGCAATATATGCGACAAAAGTTATCTATCAAAAGGCGCGTTAAAAACGCATATGTTGATCCACGGCGATAAAAGTTTTCTTTGCAGTGATTGCGGCAAAGGATTCGTCAGTAAACCGTTGCTACTGTCGCACAGTAAAATACACACCGGTGTAAAACCGTATCACTGCGAGCAGTGTGATCGGCGATTTTCACACTATGCCTCGTTAAAAGCGCACATTTTAACAcataccggtgaaaaaccattttcaTGTAAGATTTGCGGTAAAGTTTTTACGCAACGCCACCATTTGCGATATCATATGCGAACTCATAGTGGCGAGAAGCCGTATTCCTGTACCGTTTGTAATAAGAGTTTTTCATTGAATTGTAATTTAACGGTGCACATGCGTATGCATTCAGGGGAGACGCCTTATGTGTGTCCCGTTTGTGGGAAAGGGTTCTATGATTCAAGTAGCATGAAAAAACATCAACGAGGTCATACGGAAATATTAATTCAATAA
- Protein Sequence
- MFFKVCENDGFPSQICKECLSQLDQTYKFRKLCEYSAAILLSNSFKVAIAESREENIVKNESDNEDISSNPTSAGETDNSVKTKTRFSKRKRIETKSNFTDQIKKTRHPMKRDYTCEICSKNFTFSQLKIHMRSHTNEKPLTCDICGQQFTFNCNLRRHLMLHTGEKPKTHINKKSFTCEICGQKFSFNCNLRRHKMTHTGERPFKCSICKKGFIQSNNLANHMRVHTGEEPYVCNVCGKGFRQAERLRYHLHKHQNAGEKVRVNTNKKTINSNSKQIHACNICDKSYLSKGALKTHMLIHGDKSFLCSDCGKGFVSKPLLLSHSKIHTGVKPYHCEQCDRRFSHYASLKAHILTHTGEKPFSCKICGKVFTQRHHLRYHMRTHSGEKPYSCTVCNKSFSLNCNLTVHMRMHSGETPYVCPVCGKGFYDSSSMKKHQRGHTEILIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00239524;
- 90% Identity
- iTF_00239524;
- 80% Identity
- iTF_00239524;