Bneb025555.1
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- -
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000008.1:15618455-15619819[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.048 1.2e+02 4.3 0.0 26 43 133 150 129 155 0.90 2 11 0.00035 0.9 11.1 0.0 21 48 156 183 150 188 0.87 3 11 0.65 1.7e+03 0.6 0.0 21 43 185 207 181 211 0.89 4 11 2.9e-05 0.074 14.6 0.0 16 47 207 239 199 244 0.79 5 11 0.1 2.6e+02 3.2 0.0 21 43 241 263 236 273 0.86 6 11 0.56 1.4e+03 0.8 0.0 21 43 269 291 258 297 0.83 7 11 0.0044 11 7.6 0.0 21 47 297 323 293 329 0.85 8 11 0.35 9e+02 1.5 0.0 21 43 325 347 321 352 0.86 9 11 0.0053 14 7.3 0.1 21 49 353 380 342 384 0.86 10 11 0.042 1.1e+02 4.5 0.0 18 52 378 412 376 413 0.85 11 11 0.47 1.2e+03 1.1 0.1 15 45 403 433 400 437 0.85
Sequence Information
- Coding Sequence
- atggaaaacgAAGAATCTGCATCAGTGATTGATACATTTccagttaaaataaaagaggAGGAAAATTTCGAAGATCTAGAAAATTCATTTCCAGATATAGTGCAGACGCAGTTATTAGATCCATTATATCAAACTGAAGTAAAATTGGAAGAAGGTGATAgtgaaattaaattagaaaatgaaAATGATATGACTGAAGAAAATGGTGTTTTATTTGGtgaaaattacgaaaattattttaatggaTATTCGGTTGGATTCGAAATATCTAATATAGAGGGTGCAACTGGGCTGTGCAGTTTCGATACGTCTGAAGAAACTCAAACGGCTGAAGAACCATCCACGTCAAGTTTTTTGAAAAGGCATGAAGAAATATATACCGAAGGAAAGCGATACAAGTGTCCTATGTGTTTTAAAGCATTTTCAAGTTCaggaaatttgaaaatacataaacGAACACACaccggagaaaaaccatttatttgtaatatatgttttaaaacattttcacagtcGAGCAGTTTAAAAACACACGTAACCACGATACAtaccggtgaaaaaccgtacaaaTGTAATATGTGTGGTAGAGGTTTTTCGAACTCGGGAAATTTGAAAATACACGAAAGatcacatacaggagaaaaaccgttTAATTGTCcagtatgttttaaaacattttcccagTCGAGTAGTTTGAAAACACACGAAAAAATCCATACCGGAGAAAAGCCATACGAATGCAATGTGTGTTTCAAAACGTTTACGAACGTGGGAAATTTAAAAGTGCATGAACGAACTCACACCGGCGAAAAACCGTTCAGTTGCAATTTCTGTTCGAAAACGTTCTCAACGTCAAACACTTTAAAAGCGCATGAAATTGGAcataccggtgaaaaaccatttaaatgcaccatatgttcgaaaacattttcCCAGTCAAATAGTTTGAAAACGCATGAAAAAATCCATACCGGCGAAAAGCCATACGAATGCCGTGTGTGTTTCAAAGCGTTCGCGAACCTGGGAAATTTGAAAGTGCACGAAAGAACGCACACCGGCGAAAAACCGTTTAGTTGTAATTTATGCGCGAAAACGTTCTCGACGTCGAACAGTTTGAGAGCGCACGAAATGAGACATACCGGCGAAAAACCGTTTAAATGCAAAATGTGTTCGAAAACATTCTCGAACGCGAAACTGTTACGGAAACATAAAACGATCAGTAAAGGACAAAAACCATCAAAATGTGATCATTGCTCTAAAACGTTTCCAAAATTAGCCTGTTTACGGgaacatttaaaaacacatacaATAAGTACCCTAAGTACCCGTTACAGATTCAGGCGAAGAACTCGTTTACGGCATTAG
- Protein Sequence
- MENEESASVIDTFPVKIKEEENFEDLENSFPDIVQTQLLDPLYQTEVKLEEGDSEIKLENENDMTEENGVLFGENYENYFNGYSVGFEISNIEGATGLCSFDTSEETQTAEEPSTSSFLKRHEEIYTEGKRYKCPMCFKAFSSSGNLKIHKRTHTGEKPFICNICFKTFSQSSSLKTHVTTIHTGEKPYKCNMCGRGFSNSGNLKIHERSHTGEKPFNCPVCFKTFSQSSSLKTHEKIHTGEKPYECNVCFKTFTNVGNLKVHERTHTGEKPFSCNFCSKTFSTSNTLKAHEIGHTGEKPFKCTICSKTFSQSNSLKTHEKIHTGEKPYECRVCFKAFANLGNLKVHERTHTGEKPFSCNLCAKTFSTSNSLRAHEMRHTGEKPFKCKMCSKTFSNAKLLRKHKTISKGQKPSKCDHCSKTFPKLACLREHLKTHTISTLSTRYRFRRRTRLRH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00239517;
- 90% Identity
- iTF_00239517;
- 80% Identity
- iTF_00239517;