Bneb007410.1
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- Hr39
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000001.1:140564032-140577509[+]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.25 3.1e+03 -1.3 0.2 121 192 19 88 5 115 0.46 2 5 1.1 1.4e+04 -3.5 7.2 54 159 226 263 132 349 0.50 3 5 1.6e-07 0.0019 19.1 0.1 1 19 416 434 416 440 0.92 4 5 0.0006 7.3 7.3 0.7 68 152 446 529 434 545 0.64 5 5 1.2e-72 1.4e-68 233.6 0.1 206 408 544 741 529 741 0.96
Sequence Information
- Coding Sequence
- ATGGCATCAGCCGCGGGAGCGGCAGATTTGCGTCCAGCCAATGTTACGGTTACGGCCATTAACGTTGACAACACAGATTATTATAAAACGAATACGGTTAATGGCGTAACAGTGAATGTATCCGAGGCACTGCCATCATCAGCCACAACTGACCAAGatgttcaaaaatttaaagAGACTGTAAATGTAATTAATGATCATTCCACGATAAAACATAGTGATTCTGATTCCGAGGTTGCCCAAATTGACTTTCAAAGTACTGCCGTTAACTTACGAACTAAGAATGCTGAAGGCAAGaaatcaGAAATTCCTCGACCTATGTCCTGGGAGGGCGAACTTTCTGATGGTGAAAGTACTATGTGTATTGATGAAGATTCAATTCACTTAATAGATAATGCTCAATCGGTACATCCGGAAAATTTAAGTATTATATGCAATCAAGGCAAACAATCACAACAACCGTTCACACCGTTATCAAGTCCCGCTGTACGATTAAAACAGCCACCACCACCGCCAGTTGGTGGATATTCGTTGCACAGTACTCCGTCACATTCACCACTTTTGAATCAAAGACCTTTGAGTCATAGACAATTAAATGTTCCACCGACGCCGAGTCCTGACTCCGCTATACATTCAGCATACagtgtTTTCAGTTCACCAAGTCAATCACCTATAACTCAAAGACATGTAACACCTTCACTATCAAGGAATAATAGTGATGCCTCGCATTCCAGTTGCTGCAGTTACTCCAGTGTTTCCGTTTCTCCAACGCAACAATTTTCTCCTACACATTCCCCAATTCAGGGTCGCCACACCCAACATATTCATAACAGTCCATTACATCACAACGCTATTTATAGAAGTATACAAGATATTGAGCATGCTAGCCTGTACGGAACTAGTCGACAGACAAATGTTGAATTGAATGGTGAAACAGATTTAGGACAACTTGACGAAATTGATGACAAAACTGGTATTTCACAAACAGCGCTACAAAACACGCAAGGAATTTCTAGACAACAATTAATTAATAGtcCTTGTCCAATCTGTGGTGATAAAATATCCGGATTTCATTATGGTATATTCAGTTGTGAATCGTGTAAAGGATTTTTTAAACGAACTGTTCAAAATCGTAAAAATTATGTTTGTTTACGAGGAGCTTTATGTCCAGTTACAGTAACAACTCGCAAAAAATGTCCAGCATGCCGATTTGATAAATGTTTACAGTGTGGAATGAAGTTAGAAGcaaTTCGTGAAGATCGTACTAGAGGCGGAAGGTCAACTTATCAATGCTCATATAGTATTCCACCATCTTTAACGGGTATCAATGATTTTCAGAATAATCCTAATAATTTAAGTTCTGTAAAATTAGAGCCGACTGAGTCTCCTAATTCTAGTTCAACTTACGCTGCTCAAAAACGTCTTACTGTTCCGCCATTATTacagGAAATAATGGATGTGGAGCACTTATGGCATTACAACGAAGTTGAACTTACGAAATTGAGTAACGATAGATCTTTCGGACACAGTAGTAGATCTAGTTCGGGAAGTTCGAGTAATTCAAATTTAAGTATATCCACAAATCCTTTATTAGCAAATACAAAATTGCCAACAGCAGATGGTGAAACAAATTctgattttttgcaaaatttgtgCAATATTGCTGATCATAGACTTTATAAAATAGTGAAATGGTGTAAAAGTTtgcccttatttaaaaatatatctATTGATgatcaaatttgtttgttaattaattCGTGGTgtgaattgttattattttcgtGTTGTTTTCGATCGATATCGACTCCGGGTGAAATTAAAgtaTCGTTAGGTAAAAGTATAAATCTCGCGCAGGCTCGTGAGATGGGTCTACAAGCTTGTATCGAAcgtatgttaaattttacggaaCATTTACGACGGTTACGTGTTGACAAGTATGAATACGTTGCAATGAAAGTTATTGTTCTGCTTACCTCAgACGCTTCTGAGTTACGAGAGCCAGAAAAAGTGCGTGCATCACAAGAGAAAGCTCTTCAAGCGTTACAAGGGTACACGTTAACTCACTATCCAGATAGTCCAGCTAAATTTGGAGAATTACTTCTAAGAATACCTGATCTTCAACGAACTTGTCaggttGGCAAAGAAATGCTGTCGATAAAATCGAAGGAAGGTGAAGGTCCCAGTTTTAACTTGTTAATGGAACTATTACGTGGTgatcactaa
- Protein Sequence
- MASAAGAADLRPANVTVTAINVDNTDYYKTNTVNGVTVNVSEALPSSATTDQDVQKFKETVNVINDHSTIKHSDSDSEVAQIDFQSTAVNLRTKNAEGKKSEIPRPMSWEGELSDGESTMCIDEDSIHLIDNAQSVHPENLSIICNQGKQSQQPFTPLSSPAVRLKQPPPPPVGGYSLHSTPSHSPLLNQRPLSHRQLNVPPTPSPDSAIHSAYSVFSSPSQSPITQRHVTPSLSRNNSDASHSSCCSYSSVSVSPTQQFSPTHSPIQGRHTQHIHNSPLHHNAIYRSIQDIEHASLYGTSRQTNVELNGETDLGQLDEIDDKTGISQTALQNTQGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGALCPVTVTTRKKCPACRFDKCLQCGMKLEAIREDRTRGGRSTYQCSYSIPPSLTGINDFQNNPNNLSSVKLEPTESPNSSSTYAAQKRLTVPPLLQEIMDVEHLWHYNEVELTKLSNDRSFGHSSRSSSGSSSNSNLSISTNPLLANTKLPTADGETNSDFLQNLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSISTPGEIKVSLGKSINLAQAREMGLQACIERMLNFTEHLRRLRVDKYEYVAMKVIVLLTSDASELREPEKVRASQEKALQALQGYTLTHYPDSPAKFGELLLRIPDLQRTCQVGKEMLSIKSKEGEGPSFNLLMELLRGDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00238946;
- 90% Identity
- iTF_00238946;
- 80% Identity
- iTF_00238946;