Bneb028327.1
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- lrrfip2
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000011.1:4404810-4446860[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.6e-111 1.7e-106 357.3 32.0 1 299 111 433 111 434 0.86 2 2 0.0012 60 4.2 3.7 193 239 464 509 439 509 0.78
Sequence Information
- Coding Sequence
- ATGGATACGGAAAATTCTATGTCACTAAAAGAACAGTCAAATAATCATTGTTCAGACAGTGAAGACAATTCTGATAAGTGTTTATTAAGTGAAATCGATAAAgttaatttaaacataattaataatgacAGTGATGACGTCACCGATTCGTCAATAAGTCTACTTCGTGTTTCTTTATCTAGTGGTGAAGAAAACGTTcaggataaaattaattatcagtATTTTTGCTCATCGGACGACGGAAGTATCTCAGAAATGGTTAAATTTTCTACATCTTATGAAGACGATACTGATTACCTGTCTGAATTTTTGGATAAATGTACAGAAAATGCAGAAGCTCGTCTGGCTGCTAAGCGACAGGCACGCGCAGAGGCTCGAGAAATTCGAATGCGAGAATTAGAACGTCAACAACGAGAGCAGGACGAGAATGCCGACCGTGTTTACGATATTTACACCgaaccaGTAACCAGAAGTTCAACTACCCGTCATACAGGAGCCACTAGTAGAAACACAATGTTATCAAATAGCAGTTATTTATCAAGTAGGCGAAGTTCTGAAGATTCGCTAGAAGACACTGGCGGCAGTTTACGTGATATTAGAcatGAACTTCGTGAATTAGAAGAAAAGTTTCGTAAGGCAATGATAGCAAATGCACAGTTAGATAATGATAAAACTTCGTATACATATCAAATTGAATTGCTGAAAGATCGGCTTGAAGATTTAGAACAGGATCACATACAGTTACAACGAGAACATCGAGAAAAATGTCGGGAGCATGAACAGCTAAAACGAGTTGCAGCAAAGCTCAAAGAAGACTTCGTATTTGTGAAAGCACAGTTAGAAGAAAGAGATAAGTTAATAGCCGAAAAAGGATTAGTAATTGTAGTATGTGAGGAAAATGGACAGGATGATACAGATAATTTAAGTAACGGTGATACTACAGAAAATTctagttttataaaaatgccaaaaaagGCTTTAGTTAGTATTGAAAATGCTGAAATGTTAGAGTCAGCCGGAGAAGGTAGTTtagacGTACGATTAAGAAGATTTGTAGAAGAGAAAAAAGAGTTAGAAGACCAAGTAAGATCTTTACGAATTGAATTAGATGAAGAACGTAATAAATCACGAAAGCGTAGACAAAATACTAATTCTTCTATTTTTGGTAATTCAGTAACACACAACGGACCAGATTCGgattatttaaatgatttagATCCTAGtgaaatacaaagAGAAGCTAACAAACAAATAgcagatttaaaatttaagttacaaAAAGCAGAACAAGATGTTGCCTCATTACAAGGTGCAGTAGCCCGATTGGAAACACAAGTTGTCCGTTATAAAGCCGCTGCCGAAGCATCTGAGCGCGCGGAAGATgaattaaaaacagaaaaacgaAAATTGCAAAGAGaggcGCGCGAATCACAAAATCGTGTTGAAGAATTAGAAACTGCAAATAGCCATTTACAGAAACGACTTGATAAATTGAAAAATGCCAGATCAACATTGCTCAAAGAAATTTGA
- Protein Sequence
- MDTENSMSLKEQSNNHCSDSEDNSDKCLLSEIDKVNLNIINNDSDDVTDSSISLLRVSLSSGEENVQDKINYQYFCSSDDGSISEMVKFSTSYEDDTDYLSEFLDKCTENAEARLAAKRQARAEAREIRMRELERQQREQDENADRVYDIYTEPVTRSSTTRHTGATSRNTMLSNSSYLSSRRSSEDSLEDTGGSLRDIRHELRELEEKFRKAMIANAQLDNDKTSYTYQIELLKDRLEDLEQDHIQLQREHREKCREHEQLKRVAAKLKEDFVFVKAQLEERDKLIAEKGLVIVVCEENGQDDTDNLSNGDTTENSSFIKMPKKALVSIENAEMLESAGEGSLDVRLRRFVEEKKELEDQVRSLRIELDEERNKSRKRRQNTNSSIFGNSVTHNGPDSDYLNDLDPSEIQREANKQIADLKFKLQKAEQDVASLQGAVARLETQVVRYKAAAEASERAEDELKTEKRKLQREARESQNRVEELETANSHLQKRLDKLKNARSTLLKEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -