Basic Information

Insect: Brachynemurus nebulosus
Gene Symbol: -
Assembly: GCA_035578155.1
Location: JAPWDM010000001.1:14164569-14166665[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 8.5e-09 1.7e-06 29.0 0.0 5 41 15 51 12 53 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	8.5e-09	1.7e-06	29.0	0.0	5	41	15	51	12	53	0.92

Sequence Information

Coding Sequence: ATGGCTCCGAAGAGAAGTCTTGTACAATACGATAAGCGTAAGATTGAACTCGCTCTTAATGCTATTTATAGTCACAATATTTCCATTAGAAACGCTTCTCGGCAATATGGAATACCAAGGGCAACCTTGCAAGATCGAATACACGGAAGGATCGAAGAAAATATCGTAAAAATGGGCCGAGATACAGTTTTATCTCCATCGGAGGAAAAACTTCTGGTGGAGTGGTTAATCAATCTATCAAAGTGTGGTTTTCCAAGAAAAATATCAGATTTATTAAATACAGTTCAATCTATAACCAAAAAGGATAATCGAAAAACACCGTTTAAAGATGGGAGACCAGGGCTTAAATGGTATCATTTGTTTATGAAACGTCATCCTGAGTTAAATGAAAGAAATACCGAGACGATAAATTTGGGACGATCCATCGTTACTGAAGAATCAATTAGAAAGTGGTTCCAAGACTTgcaaatgtatttaaaaaaaacaaacaattgtGATATTCTCGAAGACCCTAATCGGATATTTAATGGAGATGAGACCAGTTTTAACATTTGTCCGAAATCAGGGAAGGTAATAGCACCTAAGGGCTGGAAAAACATTTATGAAATTCAACGTGGGAATGAAAAAGAAACGATCACAGTACTTTTAGTGTTCTCTGCATCAGGACACACATTAACACCTACGGTGGTATTCCCGTATGTTCGACCaccaaaagaaataataaatacaatgcCATCCTTGTGGTTTTTGGGATTATCAGATAGTGGATGGATGAAAGCAGAGCTTTTCTTTGAATACATTGCCAATGGATTGAATCGGtggttaaaagaaaaaaatattaagaaaccAGTATTACTTTTCGTTGATGGACACAAATCGCATTTGAGTAAAGAATTAAGTGACTTTTGTGCTAAAGAAGGTATTATCTTATATGCCCTCCCTGCAAATACCACACACATCATGCAACCAGCCGATGTGAGTGTATTTCGACCATTAAAACAAGAATGGCGAAAAACCGTACGAGAATGGCAAAATGAGCCAGAAAACTTTAATAAAGTATTGAcaaaaacaacattttgtcctcttttacaaaatgtcttACAAAGAGATTTGaaagaaacaattaaaaatggtTTCAAAAAGTGTGGATTATATCCTTTCAATCCAAATGCAGTGGACTTTAGTAAATGtgtgaaaaacaattttgagaGAAATATTGAACAGAAAGAGTTGGAAAATATCACTCAAGCAGAAGAAGAAGCAGCAGTTAAGGTTATAAGTTTACTAAAAAATGATTTGAAAGAAAGTGGAATTGACCCTGAAACagttataaatataatacagaaaagaaaaaaaaatatttccggtACAGAGTTTGATGGTGCTCAGATAATCATAGACAATCAAAAGGAGCATGAATCTTCGGCGTCTTATGGAATACCAATACGACCAAATAATTCTGAGTTGAATGTCAcagaaacatttattgtaaattcaGAAGGAATTTTGGAAAAAGATTCAAACGAATctttaatcgattcaaatgagaaTCCAGTAGAAGAAAAAGAATCtcaaaatttttatctcaaaGCCAGTGTAacatcacataaaaattatacagaAGGGAAAGAACCTCAAAGTTCTAATCAGGAAACTACTCCacataaaaattgtagagaagAGAAAGAATCTCAAAATTCTATTCAAGAAACTACTTCAACTTTTGAATGGAGTACACCCAAAAGTACTGTTTCCCCAGCTTTTAGAgatcatttattttttcctaaatcatccatttttgataaaaaaaaaagatcggaAAAAGAGAAAATGCCCTTCGCTATTTCATCCAATGAATGGcgagaatattttttacaaaaagatTTAGAAAAACAGGAGATTTTGAAGAAAAGACAAGAAAGGAAAGAATTAATGGAGAAGAAGAAACAGGAAACAGCTGACCTCAAAGAAGCTAAATCAAAATTGAAGCAGACGAAAAAAGAAAGTACTCAAAAGAAACATTCgacgaaaaagaaaaaaggagACGAAAATTATTCAGATAATATAATGCAACGATCGAAAAGATTAAAAAGATAA
Protein Sequence: MAPKRSLVQYDKRKIELALNAIYSHNISIRNASRQYGIPRATLQDRIHGRIEENIVKMGRDTVLSPSEEKLLVEWLINLSKCGFPRKISDLLNTVQSITKKDNRKTPFKDGRPGLKWYHLFMKRHPELNERNTETINLGRSIVTEESIRKWFQDLQMYLKKTNNCDILEDPNRIFNGDETSFNICPKSGKVIAPKGWKNIYEIQRGNEKETITVLLVFSASGHTLTPTVVFPYVRPPKEIINTMPSLWFLGLSDSGWMKAELFFEYIANGLNRWLKEKNIKKPVLLFVDGHKSHLSKELSDFCAKEGIILYALPANTTHIMQPADVSVFRPLKQEWRKTVREWQNEPENFNKVLTKTTFCPLLQNVLQRDLKETIKNGFKKCGLYPFNPNAVDFSKCVKNNFERNIEQKELENITQAEEEAAVKVISLLKNDLKESGIDPETVINIIQKRKKNISGTEFDGAQIIIDNQKEHESSASYGIPIRPNNSELNVTETFIVNSEGILEKDSNESLIDSNENPVEEKESQNFYLKASVTSHKNYTEGKEPQSSNQETTPHKNCREEKESQNSIQETTSTFEWSTPKSTVSPAFRDHLFFPKSSIFDKKKRSEKEKMPFAISSNEWREYFLQKDLEKQEILKKRQERKELMEKKKQETADLKEAKSKLKQTKKESTQKKHSTKKKKGDENYSDNIMQRSKRLKR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00238732;
90% Identity: iTF_00238732;
80% Identity: iTF_00238735;