Bneb038717.1
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- -
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000028.1:938278-940358[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.7e-09 1.5e-06 29.2 0.0 5 41 15 51 12 53 0.92
Sequence Information
- Coding Sequence
- ATGGCTCCGAAGAGAAGTCTTGTACAATACGATAAGCGTAAGATTGAACTCGCTCTTAATGCTATTTATAGTCACAATATTTCCATTAGAAACGCTTCTCGGCAATATGGAATACCAAGGGCAACCTTGCAAGATCGAATACACGGAAGGATCGAAGAAAATATCGTAAAAATGGGCCGAGATACAGTTTTATCTCCATCGGAGGAAAAACTTCTGGTGGAGTGGTTAATGAATCTATCAAAGTGTGGTTTTCCAAGAAAAATATCAGATTTATTAAATACAGTTCAATCTATAACCAAAAAGGATAATCGAAAAACACCGTTTAAAGATGGGAGACCAGGGCTTAAATGGTATCATTTGTTTATGAAACGTCATCCTGAGTTAAATGAAAGAAATACCGAGACGATAAATTTGGGACGATCCATCGTTACTGAAGAATCAATTAGAAAGTGGTTCCAAGACTTGCAAATGTATTtagaaaaaacaaacaattgtGATATTCTCGAAGACCCTAATCGGATATTTAATGGAGATGAGACCAGTTTTAACATTTGTCCGAAATCAGGGAAGGTAATAGCACCTAAGGGCTGGAAAAACATTTATGAAATTCAACGTGGGAATGAAAAAGAAACGATCACAGTACTTTTAGTGTTCTCTGCATCAGGACACACATTAACACCTATGGTGGTATTCCCGTATGTTCGACCaccaaaagaaataataaatacaatgcCATCCTCGTGGTTTTTGGGATGGATGAAAGCAGAGCTTTTCTTTGAATACATTGCCAATGGATTGAATCGGtggttaaaagaaaaaaatattaagaaaccAGTATTACTTTTCGTTGATGAACACAAATCGCATTTGAGTAAAGAATTAAGTGACTTTTGTGCTAAAGAAGGTATTATCTTGTATGCCCTCTCTGCAAATACCACACACATCATGCAACCAGCCGATGTGAGTGTATTTCGACCATTAAAACAAGAATGGCGAAAAACCGTACGAGAATGGCAAAATGAGCCAGAAAACTTTAATAAAGTATTGAcaaaaacaacattttgtcctcttttacaaaatgtcttACAAAGAGATTTGaaagaaacaattaaaaatggtTTCAAAAAGTGTGGATTATATCCTTTCAATCCAAATGCAGTGGACTTTAGTAAATGtgtgaaaaacaattttgagaGAAATATTGAACAGAAAGAGTTGGAAAATATCACTCAAGCAGAAGAAGAAGCAGCAGTTAAGGTTATAAGTTTACTAAAAAATGATTTGAAAGAAAGTGGAATTGACCCTGAAACagttataaatataatacagaaaagaaaaaaaaatatttccggtACAGAGTTTGATGGTGCTCAGATAATCATAGACAATCAAAAGGAGCATGAATCTTCGGCGTCTTATGGAATACCAATACGACCAAATAATTCTGAGTTGAATGTCAcagaaacatttattgtaaattcaGAAGGAATTTTGGAAAAAGATTCAAACGAATctttaatcgattcaaatgagaaTCCAGTAGAAGAAAAAGAATCtcaaaatttttatctcaaaGCCAGTGTAacatcacataaaaattatacagaAGGGAAAGAACCTCAAAGTTCTAATCAGGAAACTACTCCacataaaaattgtagagaagAGAAAGAATCTCAAAATTCTATTCAAGAAACTACTTCAACTTTTGAATGGAGTACACCCAAAAatTTAGAAAAACAGGAGATTTTGAAGAAAAGACAAGAAAGGAAAGAATTAATGGAGAAGAAGAAACAGGAAACAGCTGACCTCAAAGAAGCTAAATCAAAATTGAAGCAGACGAAAAAAGAAAGTACTCAAAAGAAACATTCgacgaaaaagaaaaaaggagACGAAAATTATTCAGATAATATAATGCAACGATCGAAAAGATTAAAAAGATAA
- Protein Sequence
- MAPKRSLVQYDKRKIELALNAIYSHNISIRNASRQYGIPRATLQDRIHGRIEENIVKMGRDTVLSPSEEKLLVEWLMNLSKCGFPRKISDLLNTVQSITKKDNRKTPFKDGRPGLKWYHLFMKRHPELNERNTETINLGRSIVTEESIRKWFQDLQMYLEKTNNCDILEDPNRIFNGDETSFNICPKSGKVIAPKGWKNIYEIQRGNEKETITVLLVFSASGHTLTPMVVFPYVRPPKEIINTMPSSWFLGWMKAELFFEYIANGLNRWLKEKNIKKPVLLFVDEHKSHLSKELSDFCAKEGIILYALSANTTHIMQPADVSVFRPLKQEWRKTVREWQNEPENFNKVLTKTTFCPLLQNVLQRDLKETIKNGFKKCGLYPFNPNAVDFSKCVKNNFERNIEQKELENITQAEEEAAVKVISLLKNDLKESGIDPETVINIIQKRKKNISGTEFDGAQIIIDNQKEHESSASYGIPIRPNNSELNVTETFIVNSEGILEKDSNESLIDSNENPVEEKESQNFYLKASVTSHKNYTEGKEPQSSNQETTPHKNCREEKESQNSIQETTSTFEWSTPKNLEKQEILKKRQERKELMEKKKQETADLKEAKSKLKQTKKESTQKKHSTKKKKGDENYSDNIMQRSKRLKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00238735; iTF_00238733; iTF_00238767; iTF_00238736;
- 90% Identity
- iTF_00238767; iTF_00238733; iTF_00238736; iTF_00238735;
- 80% Identity
- -