Bvim032885.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Brachylomia viminalis
Gene Symbol
Zfa
Assembly
GCA_937001565.2
Location
CAKZJP020000397.1:91209-114095[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.0003 0.042 15.9 2.1 1 23 205 228 205 228 0.97
2 11 0.015 2.1 10.5 0.4 2 23 236 257 235 257 0.96
3 11 0.031 4.4 9.5 1.9 2 23 262 283 261 283 0.97
4 11 0.02 2.9 10.1 0.7 2 23 287 309 286 309 0.96
5 11 0.00019 0.027 16.5 8.8 1 23 312 334 312 334 0.95
6 11 0.031 4.5 9.5 5.8 1 23 338 361 338 361 0.91
7 11 0.58 82 5.5 1.0 3 22 371 390 370 394 0.90
8 11 0.0022 0.31 13.1 2.5 1 23 406 429 406 429 0.96
9 11 0.32 46 6.3 4.4 1 23 435 458 435 458 0.95
10 11 3e-05 0.0043 19.0 0.3 3 23 469 489 468 489 0.99
11 11 0.0011 0.16 14.0 1.0 1 23 495 518 495 518 0.96

Sequence Information

Coding Sequence
ATGTATGAAATAGAAGAATTAAAGTACGATTATACTGCTAAAAGCAGTGGTTCGTTCTGCCAAGCCTGTTTGAGCTCTGACCGCAGCCTTTCTTCGATCGGCGAATATGTTGATGTATTTAGAAATATTTCAAATTATATATTGCCTCAaccattatttttatgttggGAATGTATGGCCATGCTCAAAAAGATAAAACTCTTTAAAGATAAATTAGAAGAAGCTCAGCGCATACTGACATATCATTATCTTAATAAACAGaaaTTGCTTCTACATACCCTatcaaaattaacaaaaacatacaCAAATCATACAATATTCATCACACATACTGATGAAGAAGATAACTGCAAGCAAAAAGTAGCCATCAAACTCGAAAACGAACATTCCAACGATTCCtttcataattatgatgaaaacAAAGACTTTTGCCatcaagaaattaaaaaagaaaatgaaacagagacaaaaaaagaaaaatcacTGCATTACCGAATCGTCTATGAAAAGAATGCCAAAAAGGTTTTGAGAAAAAAGTTTGCCATACAACCTGGTGATTCACAAATATGGCTGGACAGAGAGAGGAATTGTGATTTCTATaaggagtttaaatataaatgcaaGTTGTGTGTAAATGGATTTAATACTAAGGAGAAATTGAAAAGGCATATCTTAAAATACCATGATgaaTCTGCAGGCTCCCTCATTTGCCCAACATGCAACATACGCTTTACATGCGAACCCTCTCTAAGTGCACATATATTAACGCATGAGTTTGCATGGGAGTGTACGCGCTGTGGCTTTCAGTGTTATTCTGCGAGGAGATTCAACGCACATATAAACACGCATAGTGCGGTCCAGTGTGTGTATTGTCAGGAGAAGTTCCAAGATTTGGCGACCTTTTACACACACTACAAATCCTTACATAGTATATTTCTTTGCGATCACTGTGGAAAGCGATGTAAAACTAAACATATGCTTGAAAAACATATGAGCCGTCACTTGGACACGCACACCTGTTCAAATTGCTCTCGTCACTACAAGTcacgcgccgcactgcgcaaaCACTTCTCTTTGAAGCACAGCTCTTGTGTCGCTGAGCAGGCGTACTGTGTGCTGTGTGACAAACAGTACGATAGCGAGCATGTTTATAGAAGGCATGTGCATACCAGCGCGGCGCAtcgacgggagagggagagtcaaGTCAAAAAGAAGTTCCCCTGCCCCGAATGCAGCAACACATATTCTAGGCGAACATACATGATGAATCACTACCGACACGTGCACATGAATCAGTCCAAATACAACTGCTCGCAATGTGATAGACACTTTCTGAACAGAACGCGGTTCGTAGACCACATGCGGTTCAATCACGAAGGAGtcaagaaagaaaagaataaacTGTGCAGTATTTGTGGAAGAGGATTCGCTGCAAACCGTACTCTTCTTAACCACATGCGAACGCACTCGGGAGAGCGGCCGTACGAGTGTGAATACTGTTCGGCAAAGTTCACTCAAAGAACGTCCATGTTGTCACATGTCAAATATATACATATGAAGAGTAAGCGAAAACCGCAGTTGCAGCAGTGA
Protein Sequence
MYEIEELKYDYTAKSSGSFCQACLSSDRSLSSIGEYVDVFRNISNYILPQPLFLCWECMAMLKKIKLFKDKLEEAQRILTYHYLNKQKLLLHTLSKLTKTYTNHTIFITHTDEEDNCKQKVAIKLENEHSNDSFHNYDENKDFCHQEIKKENETETKKEKSLHYRIVYEKNAKKVLRKKFAIQPGDSQIWLDRERNCDFYKEFKYKCKLCVNGFNTKEKLKRHILKYHDESAGSLICPTCNIRFTCEPSLSAHILTHEFAWECTRCGFQCYSARRFNAHINTHSAVQCVYCQEKFQDLATFYTHYKSLHSIFLCDHCGKRCKTKHMLEKHMSRHLDTHTCSNCSRHYKSRAALRKHFSLKHSSCVAEQAYCVLCDKQYDSEHVYRRHVHTSAAHRRERESQVKKKFPCPECSNTYSRRTYMMNHYRHVHMNQSKYNCSQCDRHFLNRTRFVDHMRFNHEGVKKEKNKLCSICGRGFAANRTLLNHMRTHSGERPYECEYCSAKFTQRTSMLSHVKYIHMKSKRKPQLQQ