Bvim037596.1
Basic Information
- Insect
- Brachylomia viminalis
- Gene Symbol
- -
- Assembly
- GCA_937001565.2
- Location
- CAKZJP020000473.1:489041-491377[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 4.7e-06 0.00067 21.5 4.2 1 23 8 31 8 31 0.95 2 20 0.00076 0.11 14.6 0.8 2 23 37 59 36 59 0.94 3 20 2.1e-05 0.0029 19.5 0.3 2 23 68 90 68 90 0.97 4 20 1.1e-05 0.0016 20.3 2.3 2 23 99 121 98 121 0.95 5 20 1.7e-05 0.0024 19.8 2.4 2 23 129 151 129 151 0.96 6 20 5.2e-06 0.00074 21.4 2.3 2 23 160 182 159 182 0.96 7 20 7.9e-07 0.00011 24.0 1.1 1 23 188 211 188 211 0.98 8 20 1.7 2.4e+02 4.0 1.0 2 23 220 241 219 242 0.93 9 20 0.0035 0.5 12.5 1.6 1 23 253 276 253 276 0.95 10 20 0.00075 0.11 14.6 0.5 1 23 301 324 301 324 0.97 11 20 4.8 6.7e+02 2.6 0.9 2 21 332 351 331 352 0.90 12 20 0.016 2.3 10.4 2.3 2 23 361 383 361 383 0.95 13 20 0.0019 0.28 13.3 6.1 1 23 405 428 405 428 0.97 14 20 3.7e-05 0.0052 18.7 0.4 2 23 435 457 434 457 0.96 15 20 4.2e-05 0.0059 18.6 2.1 2 23 464 486 463 486 0.94 16 20 0.0083 1.2 11.3 2.2 1 23 492 515 492 515 0.97 17 20 0.21 30 6.9 7.1 2 23 523 545 523 545 0.95 18 20 0.0002 0.029 16.4 1.5 1 23 552 575 552 575 0.96 19 20 0.029 4.1 9.6 1.5 1 23 582 605 582 605 0.88 20 20 0.042 6 9.1 2.8 5 23 622 641 619 641 0.90
Sequence Information
- Coding Sequence
- ATGTATCAAAATCAATTAGATTTCGTTTGCGACTACTGTTCGAGGActtttacaagaaaatataatttacaaaCTCATATAGAAaactgtcatatcaactcttcATGCCACTGTAATATCTGTGGCCAAAATTTCGGCAGTCCGGCTGGATTGATCCAACATTTATCCAGAGGCCATAACAACTATGGCCAGCCGTTCCCAGAATGTGAACTGTGCGGACGAATCTTTACCAGAAAAcagaacataacatcacatatGATAACCGTACATCTACAAGGACTTGGCTACGAGATACGGTGTCGCTTGTGTAAAAAAACGTTCACTACAGAACGGAATTTGAAAAGACATATCAATCAGCTGCATAATCCTGATGTTGAGTACCCTACGTGTAACGATTGTCACAAGGTGTTCAGAGGAAAGCACTCGCTCATTGCCCATATACAGTCAGTACACAATGTGAGCGAAAAAGACGCGATCAAATGCCATTTGTGCGAAAAAGTGTACACGAATAGCAGGAACTTGAAACGACACATAGAGATGTTTCATGGCGTAAAGGGGGAGTTTAGATGCGACATCTGCCCAAAAGTATACACTTCGAACCAGAGCTTGAGACGCCATGCGAGAACGAGACACAACACCAACAGCCAGGAACATTTGACATGCAACTATTGCATGAAAGTTATCATTGGGCGAGAAAATTTCGACAGCCATATACAATTCCACCACCAAGACACCGAAATGGATGCTAGAAACGAATTTGTGTGCGAGTCGTGCGACAAAAGTTTTGAAGAAGAGTTTTGTTTGCGACAACACGTAAAATTAGAACACTCCTTTAAAACCTTCTACAAGTATTGCAGGAAATCGTTGCTCAAACAATACGGTATGGACACGCAACACATATACAATTGTGAATATTGTGACAATTCTTTTTTAACTGTCTACGAGCTTAAGGATCACATGCGCGTCAGCCACGACACTGAGTACTCGCTGTCAACTTGCAACGTttgttttaataagttttttagTAAAGAAACTAGGTCTGCGCATAGGAATGTGTGTTTACCACCGCCTAACGTGAACACTTGCAGTCACTGCGACAAGCTCTTCACTGATATTTCAAGTTTAGAATTTCATACGAGAATTTTTCACCCTCAATCTCAAATCGCTGATTCTAACATTTCATCTACAAACATAGACGAAGAACCTGTCTCGTTCAAGTGTGAGCATTGCGATCGCATTTATTATAGCGACAGATCCCTCAAGCATCATATGAAGCTAAAACACACGACAGATGAAGAAGTGGAATGCGAATTGTGTGGAAAAATTTGCAGTAACAAGTATTATTTAGCTTCACATATAAAAATCGTCCATAATAACGATTCTTGGTCGAGATGCGAATACTGTGATAAACAGTTTAAATCCAAGAGGAACATCAGAAGGCATATTGAATACACTCATTTGGGCATGCAACGGTACAAATGTATTGAATGCGAGACCTTGTTTAAAGAAAAACGGAGTTTAAGGAAACATGTTCGGACGAAGCATCCTAACTCAGCGTCGTTTCCTCAGTGCCACATATGTCACAAACGGTTTGAGTCGGCGAAATCATGTAAGATACATCTTAAACTATTGCATTCTTTCAACATGAACACTCACCCCTGTCACCTCTGTTCCGTATCGTTCAGTTCCAACGAGGCGCTAACTATACATCTGGAGACCAAACATCTAGCCGAAGATCAAATCTACAAATGTGAGGAATGCAACTTAGTTTTTAAAGGACAAGAAAAGTTTGACGTTCATAACGATGTCTGCCACGTGAATTTAGTCCCTACGATCAAGCAGAAAGTTCTTCCCAGATGCATTCTTTGTATGAAAGATTTTAGCACAAGGAAAACTTTAAAGCGACATATAAAGAAATTCCACGATGAATTTGATGTGGATGAATTAGCAACTTTTGGGTCAAGGCGAAGAATTTTTACAGTTGATTGTGAGGAGTGTATCAAAAAGTTCAACGATGATTATCATTTGAGCGTCTACAATAAGCTTAAGCACTTGAGAGACACGGAAGTATTTAAGTGTAGGACTTGTTTCGAGTCCTACAACTCTCTGGAGTTCGCGATACAGAGGTATAAGGTAAGTAACGCGGATGCTAGCAAAAGCAAAATGATTTTGAGCGAACTTTGTACCGCGGAGATGAGCGAAGAAGAGCATGACTTCTCTAACTTCGGGGCTCTGCATGATATGTTGCCGGAGAGTACTACCGgtgatttacaaataaaattagaacCTCTTGATGATTCGGAGATTGAAATCAAGACGGAGCCGTTGTCGCCGTAA
- Protein Sequence
- MYQNQLDFVCDYCSRTFTRKYNLQTHIENCHINSSCHCNICGQNFGSPAGLIQHLSRGHNNYGQPFPECELCGRIFTRKQNITSHMITVHLQGLGYEIRCRLCKKTFTTERNLKRHINQLHNPDVEYPTCNDCHKVFRGKHSLIAHIQSVHNVSEKDAIKCHLCEKVYTNSRNLKRHIEMFHGVKGEFRCDICPKVYTSNQSLRRHARTRHNTNSQEHLTCNYCMKVIIGRENFDSHIQFHHQDTEMDARNEFVCESCDKSFEEEFCLRQHVKLEHSFKTFYKYCRKSLLKQYGMDTQHIYNCEYCDNSFLTVYELKDHMRVSHDTEYSLSTCNVCFNKFFSKETRSAHRNVCLPPPNVNTCSHCDKLFTDISSLEFHTRIFHPQSQIADSNISSTNIDEEPVSFKCEHCDRIYYSDRSLKHHMKLKHTTDEEVECELCGKICSNKYYLASHIKIVHNNDSWSRCEYCDKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSASFPQCHICHKRFESAKSCKIHLKLLHSFNMNTHPCHLCSVSFSSNEALTIHLETKHLAEDQIYKCEECNLVFKGQEKFDVHNDVCHVNLVPTIKQKVLPRCILCMKDFSTRKTLKRHIKKFHDEFDVDELATFGSRRRIFTVDCEECIKKFNDDYHLSVYNKLKHLRDTEVFKCRTCFESYNSLEFAIQRYKVSNADASKSKMILSELCTAEMSEEEHDFSNFGALHDMLPESTTGDLQIKLEPLDDSEIEIKTEPLSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00447464;
- 90% Identity
- iTF_00072251;
- 80% Identity
- iTF_00238000;