Bvim037596.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Brachylomia viminalis
Gene Symbol
-
Assembly
GCA_937001565.2
Location
CAKZJP020000473.1:489041-491377[+]

Transcription Factor Domain

TF Family
zf-BED
Domain
zf-BED domain
PFAM
PF02892
TF Group
Zinc-Coordinating Group
Description
The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.03 23 6.7 2.6 18 43 9 31 5 32 0.93
2 18 0.0071 5.4 8.7 0.5 17 44 36 60 32 60 0.85
3 18 0.0029 2.2 10.0 0.1 18 43 68 90 65 91 0.87
4 18 0.00045 0.34 12.6 2.2 17 44 98 122 95 122 0.91
5 18 0.0053 4 9.1 1.2 18 44 129 152 127 152 0.94
6 18 2.3e-05 0.017 16.7 0.9 15 43 157 182 153 183 0.89
7 18 0.012 9.2 8.0 0.5 18 44 189 212 185 212 0.90
8 18 0.0049 3.7 9.2 1.2 17 43 219 242 214 243 0.85
9 18 2.1 1.6e+03 0.8 0.1 17 43 253 276 245 277 0.80
10 18 5.7 4.3e+03 -0.6 0.6 17 40 301 321 283 325 0.67
11 18 0.52 3.9e+02 2.7 0.0 15 27 358 370 354 384 0.80
12 18 0.2 1.5e+02 4.1 4.1 17 43 405 428 400 429 0.90
13 18 0.23 1.8e+02 3.8 2.4 14 29 431 446 429 458 0.73
14 18 0.0083 6.3 8.5 3.0 12 43 458 486 449 487 0.78
15 18 0.19 1.5e+02 4.1 0.8 17 44 492 516 488 516 0.85
16 18 0.00017 0.13 13.9 1.7 5 43 604 641 603 642 0.85
17 18 7.1 5.4e+03 -0.9 0.1 17 40 661 686 656 688 0.85
18 18 6.1 4.6e+03 -0.7 0.5 12 27 686 701 677 703 0.76

Sequence Information

Coding Sequence
ATGTATCAAAATCAATTAGATTTCGTTTGCGACTACTGTTCGAGGActtttacaagaaaatataatttacaaaCTCATATAGAAaactgtcatatcaactcttcATGCCACTGTAATATCTGTGGCCAAAATTTCGGCAGTCCGGCTGGATTGATCCAACATTTATCCAGAGGCCATAACAACTATGGCCAGCCGTTCCCAGAATGTGAACTGTGCGGACGAATCTTTACCAGAAAAcagaacataacatcacatatGATAACCGTACATCTACAAGGACTTGGCTACGAGATACGGTGTCGCTTGTGTAAAAAAACGTTCACTACAGAACGGAATTTGAAAAGACATATCAATCAGCTGCATAATCCTGATGTTGAGTACCCTACGTGTAACGATTGTCACAAGGTGTTCAGAGGAAAGCACTCGCTCATTGCCCATATACAGTCAGTACACAATGTGAGCGAAAAAGACGCGATCAAATGCCATTTGTGCGAAAAAGTGTACACGAATAGCAGGAACTTGAAACGACACATAGAGATGTTTCATGGCGTAAAGGGGGAGTTTAGATGCGACATCTGCCCAAAAGTATACACTTCGAACCAGAGCTTGAGACGCCATGCGAGAACGAGACACAACACCAACAGCCAGGAACATTTGACATGCAACTATTGCATGAAAGTTATCATTGGGCGAGAAAATTTCGACAGCCATATACAATTCCACCACCAAGACACCGAAATGGATGCTAGAAACGAATTTGTGTGCGAGTCGTGCGACAAAAGTTTTGAAGAAGAGTTTTGTTTGCGACAACACGTAAAATTAGAACACTCCTTTAAAACCTTCTACAAGTATTGCAGGAAATCGTTGCTCAAACAATACGGTATGGACACGCAACACATATACAATTGTGAATATTGTGACAATTCTTTTTTAACTGTCTACGAGCTTAAGGATCACATGCGCGTCAGCCACGACACTGAGTACTCGCTGTCAACTTGCAACGTttgttttaataagttttttagTAAAGAAACTAGGTCTGCGCATAGGAATGTGTGTTTACCACCGCCTAACGTGAACACTTGCAGTCACTGCGACAAGCTCTTCACTGATATTTCAAGTTTAGAATTTCATACGAGAATTTTTCACCCTCAATCTCAAATCGCTGATTCTAACATTTCATCTACAAACATAGACGAAGAACCTGTCTCGTTCAAGTGTGAGCATTGCGATCGCATTTATTATAGCGACAGATCCCTCAAGCATCATATGAAGCTAAAACACACGACAGATGAAGAAGTGGAATGCGAATTGTGTGGAAAAATTTGCAGTAACAAGTATTATTTAGCTTCACATATAAAAATCGTCCATAATAACGATTCTTGGTCGAGATGCGAATACTGTGATAAACAGTTTAAATCCAAGAGGAACATCAGAAGGCATATTGAATACACTCATTTGGGCATGCAACGGTACAAATGTATTGAATGCGAGACCTTGTTTAAAGAAAAACGGAGTTTAAGGAAACATGTTCGGACGAAGCATCCTAACTCAGCGTCGTTTCCTCAGTGCCACATATGTCACAAACGGTTTGAGTCGGCGAAATCATGTAAGATACATCTTAAACTATTGCATTCTTTCAACATGAACACTCACCCCTGTCACCTCTGTTCCGTATCGTTCAGTTCCAACGAGGCGCTAACTATACATCTGGAGACCAAACATCTAGCCGAAGATCAAATCTACAAATGTGAGGAATGCAACTTAGTTTTTAAAGGACAAGAAAAGTTTGACGTTCATAACGATGTCTGCCACGTGAATTTAGTCCCTACGATCAAGCAGAAAGTTCTTCCCAGATGCATTCTTTGTATGAAAGATTTTAGCACAAGGAAAACTTTAAAGCGACATATAAAGAAATTCCACGATGAATTTGATGTGGATGAATTAGCAACTTTTGGGTCAAGGCGAAGAATTTTTACAGTTGATTGTGAGGAGTGTATCAAAAAGTTCAACGATGATTATCATTTGAGCGTCTACAATAAGCTTAAGCACTTGAGAGACACGGAAGTATTTAAGTGTAGGACTTGTTTCGAGTCCTACAACTCTCTGGAGTTCGCGATACAGAGGTATAAGGTAAGTAACGCGGATGCTAGCAAAAGCAAAATGATTTTGAGCGAACTTTGTACCGCGGAGATGAGCGAAGAAGAGCATGACTTCTCTAACTTCGGGGCTCTGCATGATATGTTGCCGGAGAGTACTACCGgtgatttacaaataaaattagaacCTCTTGATGATTCGGAGATTGAAATCAAGACGGAGCCGTTGTCGCCGTAA
Protein Sequence
MYQNQLDFVCDYCSRTFTRKYNLQTHIENCHINSSCHCNICGQNFGSPAGLIQHLSRGHNNYGQPFPECELCGRIFTRKQNITSHMITVHLQGLGYEIRCRLCKKTFTTERNLKRHINQLHNPDVEYPTCNDCHKVFRGKHSLIAHIQSVHNVSEKDAIKCHLCEKVYTNSRNLKRHIEMFHGVKGEFRCDICPKVYTSNQSLRRHARTRHNTNSQEHLTCNYCMKVIIGRENFDSHIQFHHQDTEMDARNEFVCESCDKSFEEEFCLRQHVKLEHSFKTFYKYCRKSLLKQYGMDTQHIYNCEYCDNSFLTVYELKDHMRVSHDTEYSLSTCNVCFNKFFSKETRSAHRNVCLPPPNVNTCSHCDKLFTDISSLEFHTRIFHPQSQIADSNISSTNIDEEPVSFKCEHCDRIYYSDRSLKHHMKLKHTTDEEVECELCGKICSNKYYLASHIKIVHNNDSWSRCEYCDKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSASFPQCHICHKRFESAKSCKIHLKLLHSFNMNTHPCHLCSVSFSSNEALTIHLETKHLAEDQIYKCEECNLVFKGQEKFDVHNDVCHVNLVPTIKQKVLPRCILCMKDFSTRKTLKRHIKKFHDEFDVDELATFGSRRRIFTVDCEECIKKFNDDYHLSVYNKLKHLRDTEVFKCRTCFESYNSLEFAIQRYKVSNADASKSKMILSELCTAEMSEEEHDFSNFGALHDMLPESTTGDLQIKLEPLDDSEIEIKTEPLSP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00447464;
90% Identity
iTF_00072251;
80% Identity
iTF_00238009;