Bvim002605.1
Basic Information
- Insect
- Brachylomia viminalis
- Gene Symbol
- -
- Assembly
- GCA_937001565.2
- Location
- CAKZJP020000021.1:2530399-2547189[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.42 1.9e+03 0.1 0.0 29 63 484 518 471 533 0.83 2 6 0.0036 17 6.7 0.0 28 61 569 606 556 612 0.77 3 6 0.0022 10 7.4 0.1 28 65 614 655 604 658 0.81 4 6 0.078 3.6e+02 2.4 0.0 20 52 651 687 649 701 0.83 5 6 0.12 5.5e+02 1.8 0.1 52 52 867 867 741 971 0.70 6 6 0.007 33 5.8 0.0 29 58 979 1008 963 1027 0.82
Sequence Information
- Coding Sequence
- ATGGATTTGCATAGATTACGAGTTGTGGAATTCGATACGTCAGTAAGTGAAAAAGAAGGAGAGAAGAAGTATATTGCAGAACATGAAAAGTACAAACAAGAAGACTGGAAGAGCAGCACTGATGAAAACAAGGATAAAACTTTTGACGAAAATCTATGTCTAGGTGACAAAATAAGTCCTCCGGGACCATCGAAGAAATACCTAAATGGCATCTCAAGCGCGCCTGGCACATCGAAAAAATGTCCAGATGACAACATATGTCCTCCTGGGACATCGAAAAAGGATAATTTCGCCAGAAataaacCGAGAAAACGTGACCTCAAAATCAATTCGAGTGACGTAGATCTTACAAAGCTGTTTCAGGAAAGTGCATATTTACATCAAAAGAAACGAACTTTCAATTTGCGCAATAGAAGTTCTAGGGTTCATCACAAAGTAGAAAATGTTAAGGAAGAGAAAGAAAAGAATGAAGAAGTACACTTTTTGTTTGCGCGTGAAACACCtaggtttataaaatattgtagaAAACGTGCAAAGAATGAGAGAACAAGAGCGAAAAAGAAACGCGATTCCGAATTAAAGAACGACATCTACGGCTTTCAAAAACATAATGCATCTATGGATCAACATCAATATCGGATGTCTTGTTTCAATTTCATAGACACAGACAAAATACCCTTTAAAAAACTGAGAAGAGGATTACACCGTAAAACTACACCACCACAGCCAGTTGAAGCCCAAAATTGCGCTTGTAAACATCACGCAATGAAAGTACTAAACTCTACTTGCGAATTTGGCAAGAGTTCatcaatttattataatttaggtACCCACCCACGAAGATCTCGGAGAAAACGCGACTATGTTCAAGAAGAAGGATTTGGAAGAGAACGTTCACGTTGTATGACTAAAGATGAAACAGTAGAAGTTTCACCTTCATCACTCGGTCCCGTATCAATAAGTTGTCGCGATGCAGGTACAGGCATTAGCAGAGTCGAATTTTCCCCAGCCTGCCTTTGTCGCCCACCTTGTGTACGCGAAAAGTCGCCGGCGCTCGATAACGTTACAATTACAAGCGAGTGTAACCAGGAGCCGAGCACGCAACCCTGTACACCTAAACCAGATCAAATCTCAGTTGCAACTCAAAATCAATCGAACAAAGCAGACATCACGACTAATACCAATCGCAATAAAGCTTTGAATAACCCTAGTGGAGGGAAACACAAACAAACTAAACAAGCGAATAAGTATAAACCACATCAAATCTCTGTTGTAACTCAAAAGCAATCGAACAAAGGAGACATCACGACAAGTACCAATGTCGATATAGCTTTGAATTGCCCTCGTAGCGAGAAGCATGAACAATCTACACAAGCGAATAAATATATACCACATCAAGTCCCTGTTGCAACTCAAAAGCAACTGAACAAAGCAGACATCACGACAAGTACTAATGTCGATATAGCTTTGAATTGCCCTTGTAGCGAGAAGCATGAACAATCTACACAAGCGAATAAATATATACCACATCAAGTCCCTGTTGCAACTCAAAAGCGATCGAACAAAGCTGACATCACGACAAGTACCAATGTCGATATAGCTTTGAATTGCCCTTGTGGCGAGAACCATGAACAATCTACACAAGCGCATAAAGATAAACCACATCAAGTCCCTGTTGGAACTCAAAGGCAATCGAACAAAGCAGACATCACGACAAGTACCAATTTCGATATAGCTTTGAATTGCCCTTGTGGCGAGAAGCATGAACAATCTACACAAGCGAATAAATATATACCACATCAAGTCCCTGTTGCAACTCAAAAGCGATCGAACAAAGCTGACATCACGACAAGTACCAATGTCGATATAGCTTTGAATTGCCCTTGTGGCGAGAAGCATGAACAATCTACACAAGCGAATAAATATATACCACATCAAGTGCCTGTTGCATATCAAAAGCGATCGAACAAAGCTGACATCACGACAAGTACCAATGTCGATATAGCTTTGAATTGCCCTTGTGGCGAGAACCATGAACAATCTACACAAGTGAATAAATATAAACCATATCAAGTCTCGGTTGCAACTCAAAAGCAATCGAATAAATCAGACATCACGACAAATACCAATGTCGATAAAGCTTTGAATTTCCCTTGTGGAGGGAAACACAAACAAACTAAACAAGCGCATAAAGATAAACCACATCAAGTCCCTGTTGGAACTCAAAAGCAATCGAACAAAGCAGACATCACGACAAGTACCAATGTCGATATAGCTTTGAATTGCCCTTGTAGCGAGAACCATGAACAATCTACACAAGCGAATAAATATATACCACATCAAGTCCCTGTTGCAACTCAAAAGCGATCGAACAAAGCTGACATCACGACAAATACCAATGTCGACATAGCTTTGAATTGCCCTTGTGGCGAGAACCAGGAACAATCTACACAAGCGAATAAATATAAACCACATCAAGTCCCTGTTGCAACTCAAAAGCAATCGAACAAAGCAGACATCACGACAAGTACCAATGTCGATATAGCTTTGAATTGCCCTTGTGGCGAGAACCATGAACAATCTACACAAGCGAATAAATATAAACCACATCAAGTCTCTGTTGCAACTCAAAAGCAATCGAACAAAGCAGACATCACGACAAGTACCAATGTCGATATAGCTTTGAATTGCCCTTGTGGCGAGAACCATGAACAATCTACACAAGCGAATAAATATAAACCACATCAAGTCCCTGTTGCAACTCAAAAGCAATCGAACAAAGCAGACATCACGACAAGTACCAATGTCGATATAGCTTTGAATTGCCCTTGTGGCGAGAACCATGAACAATCTACACAAGCGAATAAATATAAACCACATCAAATCCCTGTTGCAACTCAAAAGCAATCGAACAAAGCAGACATCACGACAAGTACCAATGTCGATATAGCTTTGAATTGCCCTTGTGGCGAGAAGCATGAACAATCTACACAAGCGAATAAATATATACCACATCAAGTACCTGTTGCAACTCAAAAGCAATCGAACAAAGCGGACATCACGACTAGTACCAACGTCGATACAGTTTTGAATTGCCCTCGTGGCGAGAAGCATAAACAATCAATACATGGTTACAAACATAAACCACATAAAATCCCTGTTGCAACTCAAATGCAATCGAGAACAGCTGACAACACGACAATGATCAATCACGATATAGCTTTGAATTGCCCTTGTGAAGAGAAACACGAACAATATGAACAATGTTTCAAAAATGAACCACATCAAATCCATGCTGCAATTCAAATGCAATCGAGAACAGCTGACGACACGACAATGACCAATCGCGATATAGATTTGAATTACCCTTGTGAAGAGAAACACGAACATCATAAACatagttacaaaaataaatcacatCAGATGCATAATGCAATTCAAATGCAATCGAGAACAGCTGACAACACGATAATGACCAATCACGATATAGCCTTGAATTTCCCTTGTAAAGAGAAACACGGACAtgaaatttgtttaaaaaatgaaCCAAATCAAATCTCTGATGCAACTCAAATACAATCGAAAACAGCTGACAACACGACAATGACCAATCGCGATATAGCTATAAGTTACTGTCGTGGTGAGAAACACGAACAATCCAAACAAGCTTACAAATATCAACCCTATACAGCTTTGAATTACCTTGGCGCTGTCAAGCGGAGCACTGCTAACAAAGACATATTGTGCATTCCAAATACAGCTGACAAGGATACGATATGCACCCATAAAATTAGATCGCCAGAATATGTCCCTAAAAAACGAGACGTATCTATACAGAAACAGGCTTCTAAGATCGAAACATCTGTACATTGTACTAGTGATTACGAAAGAAGTAAAACTAAAGAAATTGTCCGTCCGGAACAAACGGTGTTACCTAAACAAGCTTACAAATATAAACCCTATAAAACCACTATTTTAATTCATAAGCAGCCAAGCATAGCAGACATCATTACAAGTACCATTCGCGATATAGCTACAAATACTTGTGTTTGTGGAGAGAAACACGAACAATCTAAACAGGCATATAAATCTAAACCACGTCAAATCTCTGTTGCAACTGAAAAGCAATCGAGTAAAGCAGACATTACGACAAGTACCAATGTCGATATAGCTTTAAATTGCCTTTGTGGAGAGAAACACGAACAATCTAAACAAAGTTACAAACATAAACCCTATAAAACGACAGTTCCAATTCAAAACATACGAAGCACTGCAGACACCATGACAAGTACCAATCACGATGTAGCTTTGAATAACCTTGGCGGGGTCAAGCTAAGCACTGCTAACAAAGAGATATTATGTATTCCAAGTACAGGTGACAAGGATACGATATGCACTCAAAAAACTAGTTCGCCAGAATATGTCCCTAAAAAACAAGATATATCCATACAGAAACGGGCTTCTAAAATCGAAACATCTGTATATTGTACTAGTGATTACGAAAAAAGTCAAACTAAAGTAATGGTCCGTCCAGAACCAACTGTGTTCGCAAGGAAAAGTTTAGATTGTACCAGTTGTTGTGCCGCCGGTACTAGTTGTGAAAAATCAGCCCCCCTAAAACAAACTTCATCTTTAGAACCAGTAACGCCATCTCTTGTTGCGAGATCATTACAAATTGGACGTGTTTCAACTAGACAACCATTATCCACAAGACAACTTCAAACGGACGAGTTACTAAAACAATTTCAACCACACGCAAATAGTCCGCTGTTTGGAATATCAACAAACTGCCGCCGTTACGGTTTAGCCCCTCAAATAACACAAGTTTCAAGTATACAAGTGAGTAGTTCACAGTTTCAAATAGCTGCAGACTGCCGTTGCGGTGTAACTCCCCAACAAAATATGCCCAATATGGAAATGGAGCAAATTGCAACTGATAGTAAAAATACATACACTCATGAAACTCGTTCAGCAAAAGAGCCCCTAAGTCAACAGCCAAGATTGACTAAAACTTCGTCTCACACTTTACAAGAACAGCCTAAATCATTCGGAATAGCTCCTGACTGCCTTTGTGGGACAAACCAACCAATTGTAGCTGAGAAGAGTTTGTATAGCAAGATAAAGGGTTCTAAATCTCACACAGCAAAGGAAACGCAGTCAAAGTCTCTGGTGACCCACCCATTGACAGACGGGGACAATTTAACTCCTCATTCTTACCAAAATCGCTCTGTAAATAAAGCACTCAGTTCCCAAAGTTCAAAGTTTTCAAAGTCACCTGAATCTTCACCGCTCCACTTGCTTACTTCTCCACCAACACAACCAGAAAAAGACTCTCGTAAAATAAATGATGAAACTGAGGCCCAGGCTGAGTACCCGCAGAACCTTTCAATTGAACAACCTAAAGTGTCCGAACAATCACGTCAGTACAGTTCTCAAACAACACCATTAACCGACAGGCAGGGACCTACATCTGGCCAAGTAACGGCTCACCCTCATAAATCTCATATTGTGACTGAGACTGCGCCAACCACTTCTACTGACATTCAGGAGCTTCCATGTGACTGTACGTGTGATTGTAACTCTATACAGCGTGTGAGGTCTAAATCTCCACAGCATCTTCCTAGTGCGCAACCAGATATCTCTAAAATAGATTCGTTTCATCGTAGTTCTCAGCTAAAACAGTCATCGTTTGACACACGCAAAACTACATTAGGAACTGATGTGCAACCTGATTTCTCACAGCATCTTCCTAGTGCGCAACCTGATATCTCTAAAATAGATTCGTTTCATCGTAGTTCTCAGCCTAATCAGGCATCGCTCCGCACACGTAAAACTACATTAGGAACTGATGGGGAATTCCCACAGCACCTTCCTAGCATGCAACCAGATATTCCTAAAGTAGACAAGACTCTATCAGAGTTTCAAAAATCACCAGAACATTTGGCATCCAAAATGTCACAAGCAAATAGTACGCTATTTGGAATAGCATCGGACTGCCCTTGCGGTGTTAGCCCCCCAATTGGTCAAGTTTTAAATCCACTAGCAAGCAAAATCACATTAGGAACTGATGGGCAACCTGAATTGTCACACTATCTTCCTAGTGCGTTACCAAATATATCTAAAATAGATTCGCTTCATCGTAGTTCTCAGTCAAAACAGTCATCGCTTCGCACACGCAAAACGACAAAAGGAACCGATGGGGAATTCTCACAGCATCTTCCTAGCCTGCAACCAGATATTCCTAAAGTATACAAGACTCTATCAAAGTTTGCAAAATCACCTGAACATTTGGCATCCAAAATGTCACAAGCTAATAGTACGGTATTTGGAATAGCATCGGACTGCCCTTGCGGTGTAAGCCCCCCAATTGGTCAAGTTTCAAATCCACTAGTAAGCAAAACTACATTAGAAACTGATGGGCAACCTGAATTCTCACAGCATCTTCCTAGCGTGCAACCAGATATTCCTAAAGTAGAAAAAACTCTTTCAAACTTTCCTAAATCACTTGAACATTTGCCACCAAAAGTGTCGCAAGCAACTAGTCCAATGTTTGGAATAACAACGCACTGCCTTTGCGGTGTTACCCCCCAACAAAATGAACGAAACCAAACGCAGCAAATTAAAACATatagtaaaaaaacaaacactcgtAAAAATAGTTCAGCAAAAGCGCCCCCCAGCCAACAGTCAAAAGTGACACAAGGTCTATCTCACTCTTTACAAGAACAGCCTAAATTGTTCGGTGTAGCTTCTGACTGTACTTGTGGAACAAATCAACCAATTGCAGCTGAGAATAATTTGTACAAGGTAACGGGTTCCAAATCTCACACACCAAAGAAAACGCAAATAAAGTCACCgccaactttaaaaaaatcttcaatcTCACCACTCCTGAAGTCTTTGCCTCACAAGTGTCAGTGTCCGGTTGACACTCTGCATGATCCTGTAGGTGAACCGCCTTATGGCACTAAAACAAACCACCCCCTGGATTGTTACAGCAATACTCACCGGGACTCGGACGAACAACTACAGCTGAGGGTGGAGTACAACAACCTTATCCTGACTTTAACCGTGTATTTATACGCTATCCTGGTCATAATTCGCCACATAAACAATCAGAACCGAATCCTGGACTGA
- Protein Sequence
- MDLHRLRVVEFDTSVSEKEGEKKYIAEHEKYKQEDWKSSTDENKDKTFDENLCLGDKISPPGPSKKYLNGISSAPGTSKKCPDDNICPPGTSKKDNFARNKPRKRDLKINSSDVDLTKLFQESAYLHQKKRTFNLRNRSSRVHHKVENVKEEKEKNEEVHFLFARETPRFIKYCRKRAKNERTRAKKKRDSELKNDIYGFQKHNASMDQHQYRMSCFNFIDTDKIPFKKLRRGLHRKTTPPQPVEAQNCACKHHAMKVLNSTCEFGKSSSIYYNLGTHPRRSRRKRDYVQEEGFGRERSRCMTKDETVEVSPSSLGPVSISCRDAGTGISRVEFSPACLCRPPCVREKSPALDNVTITSECNQEPSTQPCTPKPDQISVATQNQSNKADITTNTNRNKALNNPSGGKHKQTKQANKYKPHQISVVTQKQSNKGDITTSTNVDIALNCPRSEKHEQSTQANKYIPHQVPVATQKQLNKADITTSTNVDIALNCPCSEKHEQSTQANKYIPHQVPVATQKRSNKADITTSTNVDIALNCPCGENHEQSTQAHKDKPHQVPVGTQRQSNKADITTSTNFDIALNCPCGEKHEQSTQANKYIPHQVPVATQKRSNKADITTSTNVDIALNCPCGEKHEQSTQANKYIPHQVPVAYQKRSNKADITTSTNVDIALNCPCGENHEQSTQVNKYKPYQVSVATQKQSNKSDITTNTNVDKALNFPCGGKHKQTKQAHKDKPHQVPVGTQKQSNKADITTSTNVDIALNCPCSENHEQSTQANKYIPHQVPVATQKRSNKADITTNTNVDIALNCPCGENQEQSTQANKYKPHQVPVATQKQSNKADITTSTNVDIALNCPCGENHEQSTQANKYKPHQVSVATQKQSNKADITTSTNVDIALNCPCGENHEQSTQANKYKPHQVPVATQKQSNKADITTSTNVDIALNCPCGENHEQSTQANKYKPHQIPVATQKQSNKADITTSTNVDIALNCPCGEKHEQSTQANKYIPHQVPVATQKQSNKADITTSTNVDTVLNCPRGEKHKQSIHGYKHKPHKIPVATQMQSRTADNTTMINHDIALNCPCEEKHEQYEQCFKNEPHQIHAAIQMQSRTADDTTMTNRDIDLNYPCEEKHEHHKHSYKNKSHQMHNAIQMQSRTADNTIMTNHDIALNFPCKEKHGHEICLKNEPNQISDATQIQSKTADNTTMTNRDIAISYCRGEKHEQSKQAYKYQPYTALNYLGAVKRSTANKDILCIPNTADKDTICTHKIRSPEYVPKKRDVSIQKQASKIETSVHCTSDYERSKTKEIVRPEQTVLPKQAYKYKPYKTTILIHKQPSIADIITSTIRDIATNTCVCGEKHEQSKQAYKSKPRQISVATEKQSSKADITTSTNVDIALNCLCGEKHEQSKQSYKHKPYKTTVPIQNIRSTADTMTSTNHDVALNNLGGVKLSTANKEILCIPSTGDKDTICTQKTSSPEYVPKKQDISIQKRASKIETSVYCTSDYEKSQTKVMVRPEPTVFARKSLDCTSCCAAGTSCEKSAPLKQTSSLEPVTPSLVARSLQIGRVSTRQPLSTRQLQTDELLKQFQPHANSPLFGISTNCRRYGLAPQITQVSSIQVSSSQFQIAADCRCGVTPQQNMPNMEMEQIATDSKNTYTHETRSAKEPLSQQPRLTKTSSHTLQEQPKSFGIAPDCLCGTNQPIVAEKSLYSKIKGSKSHTAKETQSKSLVTHPLTDGDNLTPHSYQNRSVNKALSSQSSKFSKSPESSPLHLLTSPPTQPEKDSRKINDETEAQAEYPQNLSIEQPKVSEQSRQYSSQTTPLTDRQGPTSGQVTAHPHKSHIVTETAPTTSTDIQELPCDCTCDCNSIQRVRSKSPQHLPSAQPDISKIDSFHRSSQLKQSSFDTRKTTLGTDVQPDFSQHLPSAQPDISKIDSFHRSSQPNQASLRTRKTTLGTDGEFPQHLPSMQPDIPKVDKTLSEFQKSPEHLASKMSQANSTLFGIASDCPCGVSPPIGQVLNPLASKITLGTDGQPELSHYLPSALPNISKIDSLHRSSQSKQSSLRTRKTTKGTDGEFSQHLPSLQPDIPKVYKTLSKFAKSPEHLASKMSQANSTVFGIASDCPCGVSPPIGQVSNPLVSKTTLETDGQPEFSQHLPSVQPDIPKVEKTLSNFPKSLEHLPPKVSQATSPMFGITTHCLCGVTPQQNERNQTQQIKTYSKKTNTRKNSSAKAPPSQQSKVTQGLSHSLQEQPKLFGVASDCTCGTNQPIAAENNLYKVTGSKSHTPKKTQIKSPPTLKKSSISPLLKSLPHKCQCPVDTLHDPVGEPPYGTKTNHPLDCYSNTHRDSDEQLQLRVEYNNLILTLTVYLYAILVIIRHINNQNRILD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -