Bvim031167.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Brachylomia viminalis
Gene Symbol
-
Assembly
GCA_937001565.2
Location
CAKZJP020000362.1:101898-127658[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 6.5e-08 2.3e-05 25.6 0.1 4 40 218 254 217 256 0.95

Sequence Information

Coding Sequence
ATGAAAGAAGTTAACATAAATATAGAAGGCTATAACGTTAACGGGATATGTGTCGGCTGTTTGAACTACAATCGTCAAATGTTTTACCACCCCTCCGTAAAAGAATGTTTTCGTTTGCTCGGAAATATCGATGTGCCAGATGGTCTGGAAGTCCAGGTGTGCTGGGAATGCCTGGCGCGCATTAAATCTGCTATCAACTTCAAGGAACAGATTGTTAAGTCTTACGACTTCCTTATCTCGTACTCTAAGGAGCACACTTTCCTGGACTCCCCGAATGACTTCGACCTTCACGCCACCATCAACATAGAGAGGACAGCATTGGAGTGTTACGAGTGTCTGCCAGAAGCAACAGTTGTGAAGGATAATGAGATAGAGGTTAATGTTAAAGAGGAGAAGGAGACTGAGGAGAAGTATGCTTTCGAGTTGGCCATAAAAGAAGAAACATTTGACGACTCATACTTCCAAGATGTGCCCGCTGTTGACAATGATTACACATCGGACGAAGACGTGCAGCTTTCTAAACTTAAAGAGAAAGAGACGGAGAAAGGGAAGAAGAAGAGAAAGAATGAGAAGAAGAAGGAACGGGAGGGGGATAGGATGCCAGCCAACAAACGACCAAGAAAGACTACACGAGGTCTCTGTGACATATCACAGTTTGAAGCTGCCTATGACCAAATTGTCAATCACAGAGTGTCCGTAAGACAAGCGGCCAAAATGTTTAATATCACACACGTAACCCTCCAAAGATACAAGAGGAGACGGCAAATCACCAATTGTCCCGTAAAAGTCGGTTATGCACGTAACTTATTTTATACAACGGAGCAAGAAACTCTCCTAACGAAATACTTGAAAAAATACGCGGAGATATATCCTGGGCTATGTGTGAAGGTAATAAGAAGGTATGCCTCGGAGTTCAGTCAGAAACTGGGTTTGAAAACTCCGAAGCCGTGGGTTGACAATGGAATGGCTGGCGTCGATTGGTATAAGAACTTCATGTACAGAAATAAAGCGTTAGAAGATACAGTTGGTCGACAAACTGCTAAACAAAAAGTTAGAGTTTTTTATGATCGATTGTGGAGTATTTTGTGCCAGTACAACTTTGGTTCTGAAAACATTTATTGTTTAGACGAAATTGGAGTTAATattgaagagtttagagataaAATTTGGTTGATGACAACGAAAAATGGCCCTATAGCTTTAAAAGAGTCTAAAGTTCTGTTGACTTATGCAGCGAACGCTAAGGGTTATGCGATCCCCCCTTTGTTTTTAATGCGAGGAGAGAAAAAAGGAGACACTCCGAAGAGCAACGTCGAagttaaaattgaaaaagattTGGTGGACCCCCCAAAGCGCCAGAAGAGTAAGAAGGACAAAGACCCCGACAAGAAGAGTAGGAAGCTTAAGAATCTCCCTGAAGAGTTGGTAGAATTATACACAATGAGTGAAGAAGAAATGTGGGCTATCAGGATTGAGGATTTGAACAGCAAGGAGTTTCAGAAGCTTAAGTTTAGGTGTGATAACTGCATGATCGCCTTCAACACTGAGAAGTTGATGCATGATCACCTAAATGGAAAACATCAACCTAAAAGCGAAGACTGCCATCAATGCTCAATCTGCCAGGCGTATTTCCTAACTAAAGACAACGTGGCCGCTCACAAGGCATTACATCAACAAGGCTATAAATGTCGGGAGTGTGGGTTCAATACTACGCTGAAACGACGTATGTTGAAACATGTTGGGAGTCACGCGCCGAGTGGGGATGCTCACGTGTGTCAGACTTGTAAGACTAGCTTTAGCACAAAATCGAAGTTAACATACCACCGCGGCGTGTGTCGTCAAGAAAAGCCGCAATGCGATTGTTGTGGCAAAGTATTTGCCAACAAAATGACGCTCAAGTACCACCTCAAAATCCTGCCTCAGAATAAAGATGATAAACCCAAAGAGAAGCTGTTCATTCCGTGCAAGGGGTGTGATAAAGTGTTTCATTCTAAGAAGAGTTACCGAGCGCATGTTGTAATCCACGACGGTCTAACCTACCCATGTCCAATCTGCGGCAAGCTGTTTCAATGGAAACGCAACCTGGCACGACACTCGCGGAACCATCGCGAGCGGCAGGCGGGCAACTTGCACGAGTGTCGCGCTTGCAGCAAGACTTTTGCAAGCAGGGACTGCTACAACAACCACATGCGGCTCAGCAAGAAGCACGTGTCGACGGATACTTTTCCACACGAATGTAACTACTGCGGAAAGAAATTTGCTACAAAATGGTGCTTAACCGACCACATTGACTGGGATCACTTAAAGAAAATCAAATACCAATGCTCCTTCTGTTTTAAGGCATTTAAAACAGCTAAAATATTGGTGGCTCATGTCAATAATATACATGAGGGAAAGAAAAAAGAAGCAGAGGGCGAACATTTGTGTGAAATATGTGGAAAATCATACAGGACAGTGAAACGTCTAAAGGGACACGTATGGGCGATGCACACAAAACGGTCGAGCAGCAAGATTTATAAATGTAAACTGTGCCCGGCGACTTTCATGTGGCAGACCAGCATATACAAACATATGAAGATGATGCACGACAATAATAAGAAGAGTAAGAATCCGCGCGCCATCCAACCTGTGAAGAAAGAAGAGCCctacccgggaatcgaactagCGAACCGCATGCAATATTTCCAACAGAACATTGGTGGAAACTTAAATATAGTTCACATACAACCTTTGGGTATGACTCAAAATATTGTTTAG
Protein Sequence
MKEVNINIEGYNVNGICVGCLNYNRQMFYHPSVKECFRLLGNIDVPDGLEVQVCWECLARIKSAINFKEQIVKSYDFLISYSKEHTFLDSPNDFDLHATINIERTALECYECLPEATVVKDNEIEVNVKEEKETEEKYAFELAIKEETFDDSYFQDVPAVDNDYTSDEDVQLSKLKEKETEKGKKKRKNEKKKEREGDRMPANKRPRKTTRGLCDISQFEAAYDQIVNHRVSVRQAAKMFNITHVTLQRYKRRRQITNCPVKVGYARNLFYTTEQETLLTKYLKKYAEIYPGLCVKVIRRYASEFSQKLGLKTPKPWVDNGMAGVDWYKNFMYRNKALEDTVGRQTAKQKVRVFYDRLWSILCQYNFGSENIYCLDEIGVNIEEFRDKIWLMTTKNGPIALKESKVLLTYAANAKGYAIPPLFLMRGEKKGDTPKSNVEVKIEKDLVDPPKRQKSKKDKDPDKKSRKLKNLPEELVELYTMSEEEMWAIRIEDLNSKEFQKLKFRCDNCMIAFNTEKLMHDHLNGKHQPKSEDCHQCSICQAYFLTKDNVAAHKALHQQGYKCRECGFNTTLKRRMLKHVGSHAPSGDAHVCQTCKTSFSTKSKLTYHRGVCRQEKPQCDCCGKVFANKMTLKYHLKILPQNKDDKPKEKLFIPCKGCDKVFHSKKSYRAHVVIHDGLTYPCPICGKLFQWKRNLARHSRNHRERQAGNLHECRACSKTFASRDCYNNHMRLSKKHVSTDTFPHECNYCGKKFATKWCLTDHIDWDHLKKIKYQCSFCFKAFKTAKILVAHVNNIHEGKKKEAEGEHLCEICGKSYRTVKRLKGHVWAMHTKRSSSKIYKCKLCPATFMWQTSIYKHMKMMHDNNKKSKNPRAIQPVKKEEPYPGIELANRMQYFQQNIGGNLNIVHIQPLGMTQNIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01441431;
90% Identity
iTF_00121818;
80% Identity
iTF_00238173;