Bvim002874.1
Basic Information
- Insect
- Brachylomia viminalis
- Gene Symbol
- clz9
- Assembly
- GCA_937001565.2
- Location
- CAKZJP020000025.1:2795-4357[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.7e-08 1.7e-05 26.0 0.0 1 35 8 41 8 47 0.89
Sequence Information
- Coding Sequence
- ATGGCACCAAGAAAAGACTACACAAAAGAACAAATGGCCAAGGCTATCGAAGAAGTAAGAAAAGGAGAAAAAATATCTGTTGCTGCTACAAGATACGGAGTCCCAAGAATAActttacataataaaatcacCGGGAAAAGTCCTATTGATTGTAATCTAGGTCCAGCTACTGTACTTACATACGAAGAAGAAAGGATACTCGTGAAATGGATAATATTTATGGCTGAAAAACACTTCCCTGTCACCAAAGAACAATTGCTTGATAGTGTCCAAAAAATAATATCAGAGAAAAATTTAGATTCTTGTCCGTTCACCAACAATCGGCCAGGAAAAAAGTGGTACTCTTCGTTTTTAAAAAGGCATCCAGATCTCTCTGAACGCACAGCGCAAAATTTAAGTAAAGCAAGAAATGAAGTCACAGAAGATGACATACTCAGTTGGTTTGAAGCAATTAAAGGTTACCTTGAAAATAAAGACTTGCTTGAAGTTATAAATGACCCTGAAAGAATATTTAATACTGATGAAAGCGCATTCTACTTACAGCCAAAAGCTGGACGAGTCTTAGTGCGCAAGGGTGAAAAAAATGTCTATACAGCATCAGGAGACgagaaagaaaatttaactgtGTTGGTTACTGGCAATGCTGCTGGAGTTTTAGCTCCACCAATGATAGTATACCCTTATGAGCGTTTACCTGCCGTAATTGCAAATAGCGTACCAAAAGATTGGTGTATAGGCAGGTCAGATTCAGGCTGGATGTGTGCTAGAACTTTTTATGAATACATTACCAATGTATTCCATCCATggatcgaaaaaaaatatatacctaaacCAGTTATATTATTCTTGGACGGTCATAGGTCACACATGACCCTGCATTTATCAGATTTTTGTAAAGATAATGGGATTGAAGTTATCTCTCTATACCCTAACTCGACACATCTCCTTCAGCCTATGGATGTTGCGGTTTTTAGGCCATTAAAGGTAGCGTGGCAGAATCAAGTGAAGAGTTGGAAAATGGAAAATCCGAAACAAACAATGAAAAGAGAGCATTTTGCGCCAAACTTTGAGGCAGCTTTGCGAAACATTGCCACAGAAACGATAAGAAACGGATTTCGAAAAAGTGGGCTTTTTCCCTTTGGTCCAGAATACGTCGACATGAACAAAATAAGTTCACAAAATCGTACTACTGTTTCCACATcagaattagaaaaaaaaattgacaaggCAAGACAGTTTATGAATACCTTGGAATCAGAAATACGAAGCTTGTTTACAAAtgagaaattaaatttatttaccagACTGTACTATATACCCAGAGCTAATGTTGAGAACCTACTTCCAAATGAAGATCTGTCGTTATATACCATTTGGGCTAAAACTAAACACTATTTGAATGAAAACCTACCTCAGAGAGTTGCCGCAACTACCACAGACCCATCAATACAAGTTTCGCACTCTCCCGAAGCTGAACATGTAAGAGACTCCGAACTATTGCCAACACAAACTCCTGAGGCATATGTGGCCGACAACTTATTGTTGAAGAGCGCGCAATATTAA
- Protein Sequence
- MAPRKDYTKEQMAKAIEEVRKGEKISVAATRYGVPRITLHNKITGKSPIDCNLGPATVLTYEEERILVKWIIFMAEKHFPVTKEQLLDSVQKIISEKNLDSCPFTNNRPGKKWYSSFLKRHPDLSERTAQNLSKARNEVTEDDILSWFEAIKGYLENKDLLEVINDPERIFNTDESAFYLQPKAGRVLVRKGEKNVYTASGDEKENLTVLVTGNAAGVLAPPMIVYPYERLPAVIANSVPKDWCIGRSDSGWMCARTFYEYITNVFHPWIEKKYIPKPVILFLDGHRSHMTLHLSDFCKDNGIEVISLYPNSTHLLQPMDVAVFRPLKVAWQNQVKSWKMENPKQTMKREHFAPNFEAALRNIATETIRNGFRKSGLFPFGPEYVDMNKISSQNRTTVSTSELEKKIDKARQFMNTLESEIRSLFTNEKLNLFTRLYYIPRANVENLLPNEDLSLYTIWAKTKHYLNENLPQRVAATTTDPSIQVSHSPEAEHVRDSELLPTQTPEAYVADNLLLKSAQY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01338666;
- 90% Identity
- iTF_00373940; iTF_00237468; iTF_01338666; iTF_01280201; iTF_00649041;
- 80% Identity
- iTF_00237468;