Bvim008590.1
Basic Information
- Insect
- Brachylomia viminalis
- Gene Symbol
- -
- Assembly
- GCA_937001565.2
- Location
- CAKZJP020000076.1:3866270-3868617[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9e-09 3.2e-06 28.3 0.0 1 41 14 54 14 57 0.89
Sequence Information
- Coding Sequence
- ATGTCGGAGTCAAAACCCAGGAAAAGAGGTAGTACATGGGATGAAGACAGTTTAAGACGTGCCATGGAAGCAGTACAAAATAATCAACTTAATACAAATGCTGCAGCGTTGAAGTTCAATATTCCAAGACGCACCCTTAGAAACCATTTAGTAAGCGGTAACAGTACTAAAATAATTGGGAAGACAACTATTCTTACAAAACAATTAGAAGAAGATTTATCGCAGCGAATCAAACGTTTTGCAAAACTGGGTGTACCACTTGCGCCTAAATTTATCAGGAAACAAGCCTTTTTATTTTGTGAGAGGTTTAAAATCAAGCACTCGTTCAATATGTCAACAAGAATGGCTGGACGCAAATGGCTCAAAATGTTTTTGGCTCGAAACCCATCAATATCAAAAAGAAAACCCCAGCTAATGAATCCAGCTAGAGCTCAAAAAATGAATAAGCCCATTGTGAAAAACCATTTTGAAGAAGTGAAGAAACTCTATGAAGAGCTAGACATTATTGCACACCCAGAACGCTTGTATAACATGGATGAAAAAGGGTGTCGCATTACGGTTCACAAACAAACTGTAGTTTTGGCTGAAAAAGGGAATACAAGAGTACATCTTGTTGCTCCGGAACACGCCGAGAACGTTACAATAGCGATGTGCGTAAATGCGGTGGGTATTGCTATACCGcctatgattatttttaagAGGATTAGGCACAGATCAGAATTAGCATCAAATTTGCCACCTGGAACAAAGGTAAGCATGGCACCCAAAGGCAGCATGACCAGTAGCTTATTCGTTGAGTTCATACAACATTTAGCACAACATAAAGTACCCGGATCAAGGGGGCATCCCCTTGATCCTGATGTAATACCCGAAGATGCTTATGCTCCTTCAATTGTAACTGAAAGACCTTTATCGGAAACGTTACAACACCAGATCGACCAACCACTTATATCTGTTCAAGTCTCGCCCCCTGTGTCtgaatttaaaaaagtgtcagAATTGTCGTCTCAGTCTCTAATAGATGAAAGGAGGTCAGCTCATGTTTCTAACGTTTCTTCAATTTTTCCATCAACTTCCAAAGAGAAGATAGTATCGACATCGCCAAAATTTTCAGCTGCAACAGCAAAAAGAAAACCCGTTCTTGTTTCTTACAGTTCTTCAACTGATGCTTCAGACTTAGAAGTAGATATTACGGTCAATGATCATTGCCGCCCCATGCTGCTAAGTTCAGTACATCGTTTCAACGTCGCAGATACGAAACATGACCCTCAACCATCTCTGTACGATTATCCTCTTCCGAGTACGTCCGGCCTACAAGAAAATATCGTCTGTTCTAGCTCTGAATCTGATCTTGATTTGAATCTTAGTGAATCATTTATCAAAGATAACTACATGACTAAACTTCAAGTCTCGGATTTATACACTTCTTCTTCGTCATTTGATGATGACCTAGAGCAGAAAAAAGAAATCACTCCGAAAAAacaattaatacaaaacaaaagctcaattaaaacaaaagctCAACTAAAGAGTCATGAGAGTAGATCTTCGGATGATGACGAGCCGTTAATTAATCTAATAGAGGATAAAGAAAAATCGTTTCATGCTTTTTTGCCTATTCCAAACTACGCTACAATAAAGTCTTCACGTCCACGGCAAAAAGCTATTAATTATAAGGGACAAAGAATAGTTAAAGATTTATTCAAAactgaagaaaaaaagaatgagaTGAAGCAAGCGACGAGTAAGAAAAAAGGAAAGTCTACAATTAAACGAGaccaaaaaaagaaaaccaaaaataaaaatgattccgTAAAACGGCTAAAAAGAACAGTACAACAAGAAAACAGTAAAAGATCGAAAATAGAGATGAAGAAAAGTGCAGAAGGTGAAGAAAAGGAATGGTACTGTCACGCATGTGGCGAGAATAGAATGGAAGACATGAGACAATGTACCGAATGTCAAAAGTGGTATCACGAGGAGTGTATGGGTCTCACTAAAAAAGATCTCAAATTTATATGCTCAGATTGTGATTAA
- Protein Sequence
- MSESKPRKRGSTWDEDSLRRAMEAVQNNQLNTNAAALKFNIPRRTLRNHLVSGNSTKIIGKTTILTKQLEEDLSQRIKRFAKLGVPLAPKFIRKQAFLFCERFKIKHSFNMSTRMAGRKWLKMFLARNPSISKRKPQLMNPARAQKMNKPIVKNHFEEVKKLYEELDIIAHPERLYNMDEKGCRITVHKQTVVLAEKGNTRVHLVAPEHAENVTIAMCVNAVGIAIPPMIIFKRIRHRSELASNLPPGTKVSMAPKGSMTSSLFVEFIQHLAQHKVPGSRGHPLDPDVIPEDAYAPSIVTERPLSETLQHQIDQPLISVQVSPPVSEFKKVSELSSQSLIDERRSAHVSNVSSIFPSTSKEKIVSTSPKFSAATAKRKPVLVSYSSSTDASDLEVDITVNDHCRPMLLSSVHRFNVADTKHDPQPSLYDYPLPSTSGLQENIVCSSSESDLDLNLSESFIKDNYMTKLQVSDLYTSSSSFDDDLEQKKEITPKKQLIQNKSSIKTKAQLKSHESRSSDDDEPLINLIEDKEKSFHAFLPIPNYATIKSSRPRQKAINYKGQRIVKDLFKTEEKKNEMKQATSKKKGKSTIKRDQKKKTKNKNDSVKRLKRTVQQENSKRSKIEMKKSAEGEEKEWYCHACGENRMEDMRQCTECQKWYHEECMGLTKKDLKFICSDCD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00207833;
- 90% Identity
- iTF_00162625;
- 80% Identity
- -