Bvim026956.2
Basic Information
- Insect
- Brachylomia viminalis
- Gene Symbol
- -
- Assembly
- GCA_937001565.2
- Location
- CAKZJP020000297.1:1243148-1245303[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.7e-09 2.7e-06 28.5 0.0 3 39 26 61 24 67 0.89
Sequence Information
- Coding Sequence
- ATGAAACCAAAAATTAGAACTAAGAGCTCTAGAAAACAACCCAAAGAAATATGCCGACGTAAAAGATACAACTCAGAAAACTTAAATAAGGCCCTGCAAGCTGTCAAAGAGGGAATGAGTAAGAAGTTGGCGGCAAAGACTTATCAAGTGCCGCGGGCTACTTTGCAATATAGGATTAAGAACCCTGAGCACCAGTCCCGTCCAGGCCCTCCTACTATTCTGACGGAAAAGGAAGAAAAAGACCTCGAAGATTGGATAACACTTAGTTGTAGAAAAGGTTTTCCAAGACGCAAAGATGATTTAATTTGTAGTGTGGCGAATTTTCTGAAAAATAGTAAGAGGGCCAGCGTTTTTAAGAAGGGCGAAAAGTGGTATAAACTATTTCTTCAACGACATCCAAACATTTCTGTCCGCACACCTGAGGCAGTTACAGCAGCTAGTGCTGCTGTGTCAGAAAACGATGTAAGAGGCTGGTTcactcaaattgaagtttaccTTAAAGAAaacgatttatttaatgtacTTTCAGATCCATCCCGAATATTTAACGGTGACGAGACAAACTTTCTGCTTTGCCCTAAAACGGGAGTCGTATTGGCTCCTAAAGGCGAAAGAAATGTGTACGAGATAGACAATGCGCTTGCCAAAACCTCACTGACCGTGATGTTTACATTTGCTGCCAACGGAGATCTTACACCCCCAATGGTTATTTTTCCAAATAAGCGGCTATCAGCTGACATTACGACTAAAGTGCCATCAGATTGGGGTATAGGACTCAGCGGCAATGGCTGGATGAAAGCTGAGATCTTTCACGATTACATCGAGACTGTACTACATCCTCACTTGATCAAAAAACGAACTCAGTTCCCCATTATACTGTTTGTCGACGGACACAAAACCCATTTGACGTATGCCGTTAGTGAGCTATGTAAGAAGCTGGGAATTGTTTTGATTGCCCTATACCCCAACTGTACCAGATTACTGCAGCCAGCAGATGTATCAGCATTCAAGCCATTGAAATCTGGTTGGCAGAAAACTGTTTTGGAGTGGAGGCGAAATAATCCATCAGTGGCTCTCACTAAGACCAATTTCGTACCGCTtctaaataaaactatcaaaatcacGATCTCGTCATCCACAGTAATTAATGGATTCAGGGCAACGGGTCTTTGTCCATGGAATGTGAACGCTGTGGACTATACAAAATGTCTAGGCAAGGCAAATATTCCACATGCAGAAACTTTTAATAAACCTCACAAAGAGACAAAAGCATTGACCAAAGAAcaatttgaaattattattggaACACAAAAAATCAGTCACATTGAATTAGGTATACTAGGACCAGAAGACatctatttgaaaaaaaattgggatTTTTTCACGGAAGTGCAAGAGGGTTTAAACAAAGACAATACTTCCAGTCAGATAGATGGAGATATAAGATTTGATGCAGTGGACATTGAAAATATGCCAGTTGTTATAAACGAAGACTTGAGAGAAGATTTTTCTGATTGCATACCTGCACCCGCCTTAGAAGTAACTATAACAGCAGAAGACTTTGATGATGGCAACGACGATCGTTTATCTGACCATTCACAACAAGTTTTGCATATAACTCATAAAGCAGAAGTGTATAATTCAACAACTGAAAATACGAGAGTCTCTGTTCTGCCCCAACAAATTGAACGCCCTATGAATAAAGTCACACAAAAACCAAGCTCCGAATTTGACAAAATAGAAACATATATAGATCCAGTGCCTGTAAAGGAAAAAGAAGAAGGCATAAggagaagaaaagaagaaagagaAAAGAAGAAATTAGAAGCTAAAACTAAACAGACAAAACCAAAAGTAACAAAAGCTAAGTTGAAAATTAAGAAAGAACACGAAAGAGTAAACACCGGTGTGAAAAAAGTGGTTTTACTTGAAAACTTGAATACCGTGAATATCTCGTTAAACCCACTGCAAACGGCAAATGTAGACTGTATACCGGATGATGAGCAGGAGGATCAGGAAAATGATACTGACTATGCTAATTTAATACCTGAAGATAAGGATAAAAAACTGAAGTTGAAATAG
- Protein Sequence
- MKPKIRTKSSRKQPKEICRRKRYNSENLNKALQAVKEGMSKKLAAKTYQVPRATLQYRIKNPEHQSRPGPPTILTEKEEKDLEDWITLSCRKGFPRRKDDLICSVANFLKNSKRASVFKKGEKWYKLFLQRHPNISVRTPEAVTAASAAVSENDVRGWFTQIEVYLKENDLFNVLSDPSRIFNGDETNFLLCPKTGVVLAPKGERNVYEIDNALAKTSLTVMFTFAANGDLTPPMVIFPNKRLSADITTKVPSDWGIGLSGNGWMKAEIFHDYIETVLHPHLIKKRTQFPIILFVDGHKTHLTYAVSELCKKLGIVLIALYPNCTRLLQPADVSAFKPLKSGWQKTVLEWRRNNPSVALTKTNFVPLLNKTIKITISSSTVINGFRATGLCPWNVNAVDYTKCLGKANIPHAETFNKPHKETKALTKEQFEIIIGTQKISHIELGILGPEDIYLKKNWDFFTEVQEGLNKDNTSSQIDGDIRFDAVDIENMPVVINEDLREDFSDCIPAPALEVTITAEDFDDGNDDRLSDHSQQVLHITHKAEVYNSTTENTRVSVLPQQIERPMNKVTQKPSSEFDKIETYIDPVPVKEKEEGIRRRKEEREKKKLEAKTKQTKPKVTKAKLKIKKEHERVNTGVKKVVLLENLNTVNISLNPLQTANVDCIPDDEQEDQENDTDYANLIPEDKDKKLKLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00007034; iTF_01279202; iTF_00012931; iTF_00146351; iTF_00146350; iTF_01118224; iTF_00011911; iTF_00011912; iTF_00011913; iTF_00011914; iTF_00011915; iTF_00007035;
- 90% Identity
- iTF_00012931;
- 80% Identity
- -