Bvim047424.1
Basic Information
- Insect
- Brachylomia viminalis
- Gene Symbol
- -
- Assembly
- GCA_937001565.2
- Location
- CAKZJP020000838.1:51510-51890[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.9e-12 2.1e-09 38.5 0.0 1 40 25 64 25 67 0.95
Sequence Information
- Coding Sequence
- ATGGTTCGAAAATATACAAGAACATTTAGAAACTTGAGAAATGGTAAACGTTTCATGCCGTACATCTCCTATACTCATGATGATTTGAACAAGGCATTATCAGACGTCAAATCTAAAAAACTGTCTACCAGAGAAGCGGAACACAAATATGGCGTCCCCAAAAGTACAATTAACCGTcatttaaaagataaaaacttACTTTATTCAAGACCAGGGCACCCTACATTATTTTCAGAGGTGGAAGAAAAAACATTCGTCGATTATGTTAAGCATATGGGAGAATGGGGATTCCCCTTAGATCTAATGGATTTGAGAGTCTTCGCCCAAAAATTTATTACATACACGGATTACATATCCGTTTTCCATTGCTGTCCATATTAG
- Protein Sequence
- MVRKYTRTFRNLRNGKRFMPYISYTHDDLNKALSDVKSKKLSTREAEHKYGVPKSTINRHLKDKNLLYSRPGHPTLFSEVEEKTFVDYVKHMGEWGFPLDLMDLRVFAQKFITYTDYISVFHCCPY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00636244;
- 90% Identity
- iTF_01526960;
- 80% Identity
- -