Basic Information

Insect: Bombyx mori
Gene Symbol: -
Assembly: GCA_027497135.1
Location: CP114962.1:3044498-3063472[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 1.9 1e+02 3.7 0.3 1 23 229 251 229 251 0.87

2 20 0.61 34 5.2 2.3 1 23 317 340 317 340 0.96

3 20 0.006 0.33 11.5 0.9 1 23 345 367 345 367 0.97

4 20 0.031 1.7 9.2 1.8 2 23 430 451 429 451 0.97

5 20 0.91 51 4.6 3.6 2 23 721 742 720 742 0.94

6 20 0.13 7 7.3 0.2 2 23 748 769 748 769 0.97

7 20 1.1 61 4.4 5.0 1 23 790 811 790 811 0.94

8 20 1.2 68 4.2 0.5 2 23 859 880 858 880 0.94

9 20 5.7 3.2e+02 2.1 0.1 2 23 904 925 903 925 0.94

10 20 0.00085 0.048 14.2 4.4 1 23 931 953 931 953 0.98

11 20 4.4 2.5e+02 2.5 4.1 3 20 1130 1147 1128 1150 0.91

12 20 0.0052 0.29 11.7 1.3 2 23 1156 1177 1156 1177 0.97

13 20 0.74 41 4.9 3.5 1 23 1198 1219 1198 1219 0.97

14 20 0.00064 0.035 14.6 0.5 3 23 1269 1289 1268 1289 0.93

15 20 0.00053 0.029 14.8 0.4 2 23 1308 1329 1307 1329 0.97

16 20 7.3e-07 4.1e-05 23.8 1.7 1 23 1335 1357 1335 1357 0.98

17 20 1.1e-05 0.00059 20.2 0.6 1 23 1362 1384 1362 1384 0.98

18 20 0.28 16 6.3 2.2 2 23 1390 1411 1389 1412 0.93

19 20 5 2.8e+02 2.3 0.3 3 19 1420 1436 1419 1437 0.83

20 20 0.03 1.7 9.3 0.6 3 23 1450 1471 1448 1471 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	1.9	1e+02	3.7	0.3	1	23	229	251	229	251	0.87
2	20	0.61	34	5.2	2.3	1	23	317	340	317	340	0.96
3	20	0.006	0.33	11.5	0.9	1	23	345	367	345	367	0.97
4	20	0.031	1.7	9.2	1.8	2	23	430	451	429	451	0.97
5	20	0.91	51	4.6	3.6	2	23	721	742	720	742	0.94
6	20	0.13	7	7.3	0.2	2	23	748	769	748	769	0.97
7	20	1.1	61	4.4	5.0	1	23	790	811	790	811	0.94
8	20	1.2	68	4.2	0.5	2	23	859	880	858	880	0.94
9	20	5.7	3.2e+02	2.1	0.1	2	23	904	925	903	925	0.94
10	20	0.00085	0.048	14.2	4.4	1	23	931	953	931	953	0.98
11	20	4.4	2.5e+02	2.5	4.1	3	20	1130	1147	1128	1150	0.91
12	20	0.0052	0.29	11.7	1.3	2	23	1156	1177	1156	1177	0.97
13	20	0.74	41	4.9	3.5	1	23	1198	1219	1198	1219	0.97
14	20	0.00064	0.035	14.6	0.5	3	23	1269	1289	1268	1289	0.93
15	20	0.00053	0.029	14.8	0.4	2	23	1308	1329	1307	1329	0.97
16	20	7.3e-07	4.1e-05	23.8	1.7	1	23	1335	1357	1335	1357	0.98
17	20	1.1e-05	0.00059	20.2	0.6	1	23	1362	1384	1362	1384	0.98
18	20	0.28	16	6.3	2.2	2	23	1390	1411	1389	1412	0.93
19	20	5	2.8e+02	2.3	0.3	3	19	1420	1436	1419	1437	0.83
20	20	0.03	1.7	9.3	0.6	3	23	1450	1471	1448	1471	0.93

Sequence Information

Coding Sequence: ATGGAAAGTGATTCCGAAGATAATAGTAAATCTTGTGATTCATGGGATGATGACCCTGAGATAAAGGAAATAAAAGAAATGGAGAAAGACTTAGAAATGCAGATAATGAAAAACATTAAAAAGGAAAAAGTTATCTCTGTTGATTTACCATCTAATTCAACACCGGTCCAGTTAAAGGTGGAAGTGGAAGTCGAACAATATTCAGATAAAGAGGACATTGATGATCCACCGGCAAATGATGATGATGATGATGATGATGATGATGATGATGGTGACGATGATGGTGATGGTGATGATGATGATGATGATGATGATGAAGAAGACATAAGTGACAATAATATTACAAATATTGAGGAGCTCCGAGGAGCGAGTAACTGCAATAATTACAATAGAGCAACATCAGATGTTGAGTCTCTGAGTAAACTTAATGTTTACAAGAAAATAAAGAGCTTCACGGCTCAAGTTCATATATCGGCCGAAGAACTAATCGATGCAGCCAAACATCATCAGGTCTTAGATAATTATGCTGATAAGTTCCTATCAGTGAGAGTTCTAAACTCTTTATTCCGTTGGAACAGGAAAATTTTGGAGGCGGATTTTGCAGAGAGATCAATACAGGTTGCACTGGATAAGTGGATATGTTGGTTCAGACAGTGTACCAGATATTCTGACGTGCCCCAGTTTTACAAGTGTTATATGTGCGATAAGGCCTGGTGGGATTTGGATCCTTTCAGAGAACACCTACGCAAGCATAAGACTGATTATATAGTCAACTTTGAAGATTTAGGGTATGAATCAAATATAGTTGCCTATTTAAGCAAGGAATTAAGGCCTCCGTTTAAAAATATTAGAACCCAAGGAAAATGTTTAAAGTGTGATAGACGGTGCGAGAATCATTTTTTTAAAGCAAACTACAGTCCCATCATACCCGATAAGGGTGATTACCCTTATTTCTGTTTGAAGTGTACAGAGAAATTTCCAACCTGCGCTGCTCGAAGGGTACATGAACAAACACAACATGGGAAACCGCAGTTTCCTTGTTTGTATTGCAAATTGAGTTTCAGCTCTAAACGTATCCTAGAAGATCATCTCCAAAGACATACAGTGAGGTCAGACCGACCAAGCACTATTCCGACGAAATTGTGTGCAGAATGTAATCTTAGATATGCCGTATTCAAAACACACCCGTGCCCTAAGAAGTGGTTCCGTTGGTGCAACCAATGCTACAGACAATTTGATATGAAGGGAGCTCAAGAAATACATGGTTTATTTTCAAAAACAAACGTCAGCTGTAATATATGCTCTCAGAAGTTTTTCAGCGAATGTTCTCTGGTTGATCATTATTTAACGCACACAAACAACTTCACCCTGCAGTATTTGTGCACTAGATGTGGCGTTTTCATTCACAAGGACTTGAGGAAGCAGCACAAGAAACAGTTTCACAATAGGAATCCGTATTACAACAAAATACCATTGGTTTTGCCGTTTATTGTTCCGAAAGCGTTGTTCTTATCGAAGATCGAGGGACTGCCGGGAACTAAAGTTCAAGTCTTGTACGTGGTCGAAACCCCTCCACCTCCTCGAGTGTCAAAGCAGCAAGAACTCAAAGCGGCTCTGGACGGCCTCAAGCAAGACATGTACGAGCATCTATCGCAGTACGCCAACACGTCTCAGACTACCACTCCAACGAGGAACTGTGAAACGACCTGCATTGATCTCACTGAATCCGAGCCCGAGCAAGAGATTAATGTAAAAACAGAAATAAACACTGAGCCCGAGGAATGCGAGGATGACATCATAAACTTAAACATCAACAATATATCGTTAATGAAAACGAGATCCACCGAACAAAATACCACAGAACAGAACAAGGAACTCGAATTAGTTTTGGAAAAAAATAATCAAATTACCAACGAGCCCGGTACGTTTAATATTGAGATATTAAATGTAAATAATGGTACAGATTCGTTTGAAATTCAATTAAAGTATGACAGTGAAAGCAGCTTGAAACAAAGCCAGAGAGAGAAGTCTGTGAGTCACATTGAACACAATATTTCGTCCGATGAATTCGCATCAGATTCCAGCAACGACGAAGGGACCGAGTGCACGGAAAATGGCGACGTAATAAGCGTAAATAAATATCGAGTTAAACAGCCCTGTGTCTGCACGAAATGTAACACAAGATACGATACGCTCGAAAGTTATTTGAGTCATTTCACGAGCCACAATTACCAGTCGAACACGTGTCCGCAGTGTCTGTCAGTGTTTGGCACCCCAATGAAACTGGCCTGGCACTTCAAGACCCACATAAACAGGACGTTCTTGAAGACGAAGTTCCTGGACGGCGACCAGAAATCGGAGAAGCTGTACCGCTGCAAACACTGCAAGCAGATATTCTTCAAGAATGAATTCTTTGAGCACTGGGAGAGTCATTTTGTGTTGGTGCGCTTCGAGGACTCTGAACGCTACGAAACGGCTCTTGAAGTCGGCAAGAGAAACAGAACTATTTCTGAGTCATCGATGAAAACTATAATAGATTGCATACTGAATGATGAATATTTGAAATCACAAAAAACCTGTGTCGTGTGTATGAAGGAGTTCAATAGACAGAACGTCATCAAGAGACATCTGATTGAACATATGTTAAAGGATGCACAATTGAAAGGTGAAAAGAACGGAGACACCAACAGGATTTTTAATTGGTGCCTGagATGTCAAATTTGTTCGGAGCTTCTGGAGAATTCGATTGTGTACAAGATTCATCTGCGCGAGCACGCCTCCCTACCCGTCCACACGTGCGACGTGTGCGATCGCGTATTCAACAACACGTATTACTTCGCGAAGCACAAAAAGAAACACGATCTGGAGAAGGAGAACAGCATCAAGCAGCTATACGAGAAGCAGACTGAAGCGAACCCGTCTGCGGGGAGACAAGTGCTAGAATCCGAGCCGGAGCTAAATATAAAGCCCGAAATGCCGTTTGAAGTGATTGATGAATTCGAGGATGATGCAAACGTCAATGATGATATGGCAACACCACAACGCGACGAGGGAATGTCAGTTGAATCGAGTATCAGTGACGTTGACAAAATCAAAATCGAAGCGACTACATCTATACAAGACATCAAGAAGGAGATCGTGGAAGAAGACCTCCAGGTGGAGATGGATTACAACGAGTTCAGCGTAGTCAAATTGGAGTATGAGGATCTGATAGAGCGGAAAGAGAACTCACCGAGTGAGCTCGCGATTACAGCCGAGGAGAACTCCTCAGATTCGAGCCTAGACGAGGAGATAGAGTACGCTGAAGTCGAGGATCTACTCAACGTGAAGAGGAAACGTCACGAGACCAGAGGCCGGAAGCCAGCCGTCCAAATCGAGCCGCATCTCTGCACGAAATGCGACAAAGAGTACGACAGTCTCTACAAATATCTAGAGCACCTCACCTGTCACGACCTCAAGGCTAACACCTGTCCGCAGTGTCTCAAGACATTCGAGAGGACAACGAAGCTGATGTGGCACTTCAAGATCCACATCAACCAAACGTTCCTGAAGATCAAGTTCCTCAAGACCGAGGAAAAAGCCGGTAAGATATTCCGGTGTAGACATTGCAAGAAGATCGTGACGAAGGATGATTTCTTTGAACATTGGGAGAGGCACTACGCTTTGATGGACTGGAAGAGCCAAAAAAAAATGGACGTTGTCATTGTCAATACGGACAAGAATAACAAGAATCTCTCGGAAACTATGATGAAAAATATTATAGATTACATACTGGGCGATCCGAAGTTCAAGCGCCAAAAGATTTGCGTCGTCTGCAAGAGGACCTTCAACCGGCAGAGCGACGTCAAGCGCCACCTGGTGGAGCACCTGCTCAAGGACGCGCAGGTCAACGGCGAGAGGAGCTTCTTCAACTGGTCGTTGAGATGTCAAATATGTTCGGAGGCCTTCGACAAGGCGAGCTCGTACAAGAGCCACCTGCGGGAGCACGCGTCGCTGCCGATATACACGTGCGAGCTGTGCGACCGCGTCTTCAGCGACTCGAGCAACTTCACCAAGCACAAGAAGGTCCACAACCTGCAGAACTACAGATGCGAGATATGCAACAAAAAATTTCAGACCCTGCCGTATCTCGAGAAGCACATGGAGATACACAAAGAGAAGCCAATTAAATGTCCCTGTTGCCCGGTGATGTCGTACACTCCGTCCTTAAACAGGAGACACATCAGGATGCATCACGTAAAGGGCACAAAAACGCTGTGTCCTATTTGTTCGGAGCGATTCCACACACTCAAAATGAAATGGGACCATCTGTGGCAAGTCCATAAATTGAGGAAGGAGAAATGGGATTGTAACCTGTGCGGGTCCAGCTACAGGAAATTCAAAGACCTGAAGGACCATTACAAAGATGTGCACCGCAAGAAATACTTGAAGCTCATGTCTGGGAATAAGAAGGATAAGATAAAGAAGTTGCTATTGCAAGCTAACGTGACGGTTAAAAGTGAACCTGCAGAAGAATCTAATGAAATGGTGGACATAATAAACTAG
Protein Sequence: MESDSEDNSKSCDSWDDDPEIKEIKEMEKDLEMQIMKNIKKEKVISVDLPSNSTPVQLKVEVEVEQYSDKEDIDDPPANDDDDDDDDDDDGDDDGDGDDDDDDDDEEDISDNNITNIEELRGASNCNNYNRATSDVESLSKLNVYKKIKSFTAQVHISAEELIDAAKHHQVLDNYADKFLSVRVLNSLFRWNRKILEADFAERSIQVALDKWICWFRQCTRYSDVPQFYKCYMCDKAWWDLDPFREHLRKHKTDYIVNFEDLGYESNIVAYLSKELRPPFKNIRTQGKCLKCDRRCENHFFKANYSPIIPDKGDYPYFCLKCTEKFPTCAARRVHEQTQHGKPQFPCLYCKLSFSSKRILEDHLQRHTVRSDRPSTIPTKLCAECNLRYAVFKTHPCPKKWFRWCNQCYRQFDMKGAQEIHGLFSKTNVSCNICSQKFFSECSLVDHYLTHTNNFTLQYLCTRCGVFIHKDLRKQHKKQFHNRNPYYNKIPLVLPFIVPKALFLSKIEGLPGTKVQVLYVVETPPPPRVSKQQELKAALDGLKQDMYEHLSQYANTSQTTTPTRNCETTCIDLTESEPEQEINVKTEINTEPEECEDDIINLNINNISLMKTRSTEQNTTEQNKELELVLEKNNQITNEPGTFNIEILNVNNGTDSFEIQLKYDSESSLKQSQREKSVSHIEHNISSDEFASDSSNDEGTECTENGDVISVNKYRVKQPCVCTKCNTRYDTLESYLSHFTSHNYQSNTCPQCLSVFGTPMKLAWHFKTHINRTFLKTKFLDGDQKSEKLYRCKHCKQIFFKNEFFEHWESHFVLVRFEDSERYETALEVGKRNRTISESSMKTIIDCILNDEYLKSQKTCVVCMKEFNRQNVIKRHLIEHMLKDAQLKGEKNGDTNRIFNWCLRCQICSELLENSIVYKIHLREHASLPVHTCDVCDRVFNNTYYFAKHKKKHDLEKENSIKQLYEKQTEANPSAGRQVLESEPELNIKPEMPFEVIDEFEDDANVNDDMATPQRDEGMSVESSISDVDKIKIEATTSIQDIKKEIVEEDLQVEMDYNEFSVVKLEYEDLIERKENSPSELAITAEENSSDSSLDEEIEYAEVEDLLNVKRKRHETRGRKPAVQIEPHLCTKCDKEYDSLYKYLEHLTCHDLKANTCPQCLKTFERTTKLMWHFKIHINQTFLKIKFLKTEEKAGKIFRCRHCKKIVTKDDFFEHWERHYALMDWKSQKKMDVVIVNTDKNNKNLSETMMKNIIDYILGDPKFKRQKICVVCKRTFNRQSDVKRHLVEHLLKDAQVNGERSFFNWSLRCQICSEAFDKASSYKSHLREHASLPIYTCELCDRVFSDSSNFTKHKKVHNLQNYRCEICNKKFQTLPYLEKHMEIHKEKPIKCPCCPVMSYTPSLNRRHIRMHHVKGTKTLCPICSERFHTLKMKWDHLWQVHKLRKEKWDCNLCGSSYRKFKDLKDHYKDVHRKKYLKLMSGNKKDKIKKLLLQANVTVKSEPAEESNEMVDIIN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00236229;
90% Identity: iTF_00236229;
80% Identity: -