Basic Information

Insect: Bombyx mandarina
Gene Symbol: -
Assembly: GCA_003987935.1
Location: NW:203179-220632[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 1.6 72 3.7 0.3 1 23 227 249 227 249 0.87

2 20 0.52 23 5.2 2.4 1 23 315 338 315 338 0.96

3 20 0.0051 0.23 11.5 0.9 1 23 343 365 343 365 0.97

4 20 0.027 1.2 9.2 1.8 2 23 428 449 427 449 0.97

5 20 0.77 35 4.6 3.6 2 23 719 740 718 740 0.94

6 20 0.11 4.8 7.3 0.2 2 23 746 767 746 767 0.97

7 20 0.93 42 4.4 5.0 1 23 788 809 788 809 0.94

8 20 1 47 4.2 0.5 2 23 857 878 856 878 0.94

9 20 4.8 2.2e+02 2.1 0.1 2 23 902 923 901 923 0.94

10 20 0.00073 0.033 14.2 4.4 1 23 929 951 929 951 0.98

11 20 3.7 1.7e+02 2.5 4.1 3 20 1129 1146 1127 1149 0.91

12 20 0.0044 0.2 11.7 1.3 2 23 1155 1176 1155 1176 0.97

13 20 0.63 29 4.9 3.5 1 23 1197 1218 1197 1218 0.97

14 20 0.00054 0.024 14.6 0.5 3 23 1268 1288 1267 1288 0.93

15 20 0.00045 0.02 14.8 0.4 2 23 1307 1328 1306 1328 0.97

16 20 6.2e-07 2.8e-05 23.8 1.7 1 23 1334 1356 1334 1356 0.98

17 20 8.9e-06 0.0004 20.2 0.6 1 23 1361 1383 1361 1383 0.98

18 20 0.24 11 6.3 2.2 2 23 1389 1410 1388 1411 0.93

19 20 4.3 1.9e+02 2.3 0.3 3 19 1419 1435 1418 1436 0.83

20 20 0.025 1.1 9.3 0.6 3 23 1449 1470 1447 1470 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	1.6	72	3.7	0.3	1	23	227	249	227	249	0.87
2	20	0.52	23	5.2	2.4	1	23	315	338	315	338	0.96
3	20	0.0051	0.23	11.5	0.9	1	23	343	365	343	365	0.97
4	20	0.027	1.2	9.2	1.8	2	23	428	449	427	449	0.97
5	20	0.77	35	4.6	3.6	2	23	719	740	718	740	0.94
6	20	0.11	4.8	7.3	0.2	2	23	746	767	746	767	0.97
7	20	0.93	42	4.4	5.0	1	23	788	809	788	809	0.94
8	20	1	47	4.2	0.5	2	23	857	878	856	878	0.94
9	20	4.8	2.2e+02	2.1	0.1	2	23	902	923	901	923	0.94
10	20	0.00073	0.033	14.2	4.4	1	23	929	951	929	951	0.98
11	20	3.7	1.7e+02	2.5	4.1	3	20	1129	1146	1127	1149	0.91
12	20	0.0044	0.2	11.7	1.3	2	23	1155	1176	1155	1176	0.97
13	20	0.63	29	4.9	3.5	1	23	1197	1218	1197	1218	0.97
14	20	0.00054	0.024	14.6	0.5	3	23	1268	1288	1267	1288	0.93
15	20	0.00045	0.02	14.8	0.4	2	23	1307	1328	1306	1328	0.97
16	20	6.2e-07	2.8e-05	23.8	1.7	1	23	1334	1356	1334	1356	0.98
17	20	8.9e-06	0.0004	20.2	0.6	1	23	1361	1383	1361	1383	0.98
18	20	0.24	11	6.3	2.2	2	23	1389	1410	1388	1411	0.93
19	20	4.3	1.9e+02	2.3	0.3	3	19	1419	1435	1418	1436	0.83
20	20	0.025	1.1	9.3	0.6	3	23	1449	1470	1447	1470	0.93

Sequence Information

Coding Sequence: atggaaAGTGATTCCGAAGATAATAGTAAATCTTGTGATTCATGGGATGATGACCCTGagataaaggaaataaaagaaATGGAGAAAGACTTAGAAATGCAGataatgaaaaacattaaaaaggaAAAAGTTATCTCTGTTGATTTACCATCTAATTCAACACCGGTCCAGTTAAAGGTGGAAGTGGAAGTCGAACAATATTCAGATAAAGAGGACATTGATGATCCACCGgcaaatgatgatgatgatgatgatgatgatgatggtgacgATGATggtgatggtgatgatgatgatgatgatgatgatgaagaagaCATAAGTgacaataatattacaaatattgaGGAGCTCCGAGGAGCGAGTAACTGCAATAATTACAATAGAGCAACATCAGATGTTGAGTCTCTGAGTAAACTTAATGTTTACAAGAAAATAAAGAGCTTCACGGCTCAAGTTCATATATCGGCCGAAGAACTAATCGATGCAGCCAAACATCATCAGGTCTTAGATAATTATGCTGATAAGTTCCTATCAGTGAGAGTTCTAAACTCTTTATTCCGTTGGAACAGGAAAATTTTGGAGGCGGATTTTGCAGAGAGATCAATACAGGTTGCACTGGATAAGTGGATATGTTGGTTCAGACAGTGTACCAGATATTCTGACGTGCCCCAGTTTTACAAGTGTTATATGTGCGATAAGGCCTGGTGGGATTTGGATCCTTTCAGAGAACACCTACGCAAGCATAAGACTGATTATATAGTCAACTTTGAAGATTTAGGGTATGAATCAAATATAGTTGCCTATTTAAGCAAGGAATTAAGGCCtccgtttaaaaatattagaaccCAAGGAAAATGTTTAAAGTGTGATAGACGGTGCgagaatcatttttttaaagcaaactACAGTCCCATCATACCCGATAAGGGTGATTACCCTTATTTCTGTTTGAAGTGTACAGAGAAATTTCCAACCTGCGGTGCTCGAAGGGTACATGAACAAACACAACATGGGAAACAGCAGTTTCCTTGTTTGTATTGCAAATTGAGTTTCAGCTCTAAACGTATCCTAGAAGATCATCTCCAAAGACACACAGTGAGGTCAGACAGACCAAGCACTATTCCGACGAAATTGTGTGCAGAATGTAATCTTAGATATGCCGTATTCAAAACACACCCGTGCCCTAAGAAGTGGTTCCGTTGGTGCAACCAATGCTACAGACAATTTGATATGAAGGGAGCTCAAGAAATACAtggtttattttcaaaaacaaacgtCAGCTGTAATATATGCTCTCAGAAGTTTTTCAGCGAATGTTCTCTGGTTGATCATTATTTAACGCACACAAACAACTTCACCCTGCAGTATTTGTGCACTAGATGCGGCGTTTTCATTCACAAGGACTTGAGGAAGCAGCACAAGAAACAGTTTCACAATAGGAATCCGTATTACAACAAAATACCATTGGTGTTGCCGTTTATTGTTCCGAAAGCGTTGTTCTTATcgaagatcgagggactgccgGGAACTAAAGTTCAAGTCTTGTACGTGGTCGAAACCCCTCCACCTCCTCGAGTGTCAAAGCAGCAAGAACTCAAAGCGGCTCTGGACGGCCTCAAGCAAGACATGTACGAGCATCTATCGCAGTACGCCAACACGTCTCAGACTACCACTCCAACGAGGAACTGTGAAACGACCTGCATTGATCTCACTGAATCCGAGCCCGAGCAAGAGATTAAtgtaaaaacagaaataaatattgagCCCGAGGAATGCGAGGATGACATCATAaacttaaacattaataatatatccTTAATGAAAACGAGAGCCACCGAACAAAGTACCACAGAACAGAACAAGGAACCCGAATTAGTTTTGGAAAAAACTAATCAAATTACCAACGAGCCCGGTACGTTTAATATTGAgatattaaatgtaaataatggtACAGATtcgtttgaaattcaattaaagtaTGACAGTGAAAGCAGCTTGAAACAAAGCCAGAGAGAGAAGTCTGTGAGTCACATTGAACACAATATTTCGTCCGATGAATTTGCATCAGATTCCAGCAACGACGAAGGGACCGAGTGCACGGAAAATGGCGACGTAataagtgtaaataaatatcgAGTTAAACAGCCCTGTGTCTGCACGAAATGTAATACAAGATACGATACGCTCGAGAGTTATTTGAGTCATTTCACGAGCCACAATTACCAGTCGAACACGTGCCCGCAGTGTCTGTCAGTGTTTGGCACCCCAATGAAACTGGCCTGGCATTTCAAGACCCACATAAACAGGACGTTCTTGAAGACGAAGTTCCTGGACGGCGACCAGAAATCGGAGAAGCTGTACCGCTGCAAACACTGCAAGCAGATATTCTTCAAGAATGAATTCTTTGAGCACTGGGAGAGTCATTTTGTGTTGGTGCGCTTCAAGGACTCTGAACGCTACGAAACGGCTCTTGAAGTTGGAAAGAGAAGCAGAACCATTTCTGAGTCATCGATGAAAACTATAATAGATTGCATACTGAATGATGAATATTTGAAATCACAAAAAACCTGTGTCGTGTGTATGAAGGAGTTCAATAGACAGAACGTCATCAAGAGACATCTGATTGAACATATGTTAAAGGATGCACAATTGAAAGGTGAAAAGAACGGAGACACCAACAGGATTTTTAATTGGTGCCTGAGATGTCAAATTTGTTCGGAGCTTCTGGAGAATTCGATTGTGTACAAGATTCATCTGCGCGAGCACGCCTCCCTACCCGTCCACACGTGCGACGTGTGCGATCGCGTCTTCAACAACACGTATTACTTCGCGAAGCACAAAAAGAAACACGATCTGGAGAAGGAGAACAGCATCAAGCAACTATACGAGAAGCAGACTGAAGCGAACCCGTCTGCGGGGAGACAAGTGCTAGAATCCGAGCCGGAGCTAAATATAAAGCCCGAAATGCCGTTTGAAGTGATTGATGAATTCGAGGATGATGCAAACGTCAATGATGATATGGCAACACCACAACGCGACGAGGGAATGTCAGTTGAATCGAGTATCAGCAGTGACGTTGACAAAATCAAAATCGAAGCGACTACATCTATACAAGACATCAAGAAGGAGATCGTGGAAGAAGACCTCCAGGTGGAGATGGATTACAACGAGTTCAGCGTAGTCAAATTGGAGTATGAGGATCTGATAGAACGGAAAGAGAACTCACCGAGTGAGCTCGCGATTACAGCCGAGGAAAACTCCTCGGATTCAAGCCTAGACGAGGAGATAGAGTACGCTGAAGTCGAGGATCTACTCAACGTGAAGAGGAAACGTCACGAGACCAGAGGCCGGAAGCCAGCCGTCCAAATCGAGCCGCATCTCTGCACGAAATGCGACAAAGAGTACGACAGTCTGTACAAATATCTCGAGCACCTCACCTGTCACGACCTCAAGGCTAACACCTGTCCGCAGTGTCTCAAGACATTCGAGAGGACAACGAAGCTGATGTGGCACTTCAAGATCCACATCAACCAAACTTTCCTGAAGATCAAGTTCCTCAAGACGGAGGAAAAAGCCGGTAAGATATTCCGGTGTAGACATTGCAAGAAGATCGTGACGAAGGATGATTTCTTTGAACATTGGGAGAGGCACTACGCTTTGATGGACTGGAAGAGCCAAAAAAAAATGGACGTTGTCATTGTCAATACGGACAAGAATAACAAGAATCTCTCGGAAACTatgatgaaaaatattatagATTACATACTGGGCGATCCGAAGTTCAAGCGCCAAAAGATTTGCGTCGTCTGCAAGAGGACCTTCAACCGGCAGAGCGACGTCAAGCGCCACCTGGTGGAGCACCTGCTCAAGGACGCGCAGGTCAACGGCGAGAGGAGCTTCTTCAACTGGTCGTTGAGaTGTCAAATATGTTCGGAGGCCTTCGACAAGGCGAGCTCGTACAAGAGCCACCTGCGGGAGCACGCGTCGCTGCCGATATACACGTGCGAGCTGTGCGACCGCGTCTTCAGCGACTCGAGCAACTTCACCAAGCACAAGAAGGTCCACAACCTGCAGAACTACAGATGCGAGATATGCAACAAGAAATTTCAGACCCTGCCGTATCTCGAGAAGCACATGGAGATACACAAAGAGAAGCCAATTAAATGTCCTTGTTGCCCGGTGATGTCGTACACTCCGTCCTTAAACAGGAGACACATCAGGATGCATCACGTGAAGGGCACAAAAACGCTGTGTCCTATTTGTTCGGAGCGATTCCACACACTCAAAATGAAATGGGACCATCTGTGGCAAGTCCATAAATTGAGGAAGGAGAAATGGGATTGTAACCTGTGCGGGTCCAGCTACAGGAAATTCAAAGATCTGAAGGACCATTACAAAGATGTGCACCGCAAGAAATACTTGAAGCTCATGTCTGGGAATAAGAAGGATAAGATAAAGAAGTTGCTATTGCAAGCTAACGTGACGGTTAAAAGTGAACCTGCAGAAGAATCTAATGAAATGGTGGACATAATAAACtag
Protein Sequence: MESDSEDNSKSCDSWDDDPEIKEIKEMEKDLEMQIMKNIKKEKVISVDLPSNSTPVQLKVEVEVEQYSDKEDIDDPPANDDDDDDDDDGDDDGDGDDDDDDDDEEDISDNNITNIEELRGASNCNNYNRATSDVESLSKLNVYKKIKSFTAQVHISAEELIDAAKHHQVLDNYADKFLSVRVLNSLFRWNRKILEADFAERSIQVALDKWICWFRQCTRYSDVPQFYKCYMCDKAWWDLDPFREHLRKHKTDYIVNFEDLGYESNIVAYLSKELRPPFKNIRTQGKCLKCDRRCENHFFKANYSPIIPDKGDYPYFCLKCTEKFPTCGARRVHEQTQHGKQQFPCLYCKLSFSSKRILEDHLQRHTVRSDRPSTIPTKLCAECNLRYAVFKTHPCPKKWFRWCNQCYRQFDMKGAQEIHGLFSKTNVSCNICSQKFFSECSLVDHYLTHTNNFTLQYLCTRCGVFIHKDLRKQHKKQFHNRNPYYNKIPLVLPFIVPKALFLSKIEGLPGTKVQVLYVVETPPPPRVSKQQELKAALDGLKQDMYEHLSQYANTSQTTTPTRNCETTCIDLTESEPEQEINVKTEINIEPEECEDDIINLNINNISLMKTRATEQSTTEQNKEPELVLEKTNQITNEPGTFNIEILNVNNGTDSFEIQLKYDSESSLKQSQREKSVSHIEHNISSDEFASDSSNDEGTECTENGDVISVNKYRVKQPCVCTKCNTRYDTLESYLSHFTSHNYQSNTCPQCLSVFGTPMKLAWHFKTHINRTFLKTKFLDGDQKSEKLYRCKHCKQIFFKNEFFEHWESHFVLVRFKDSERYETALEVGKRSRTISESSMKTIIDCILNDEYLKSQKTCVVCMKEFNRQNVIKRHLIEHMLKDAQLKGEKNGDTNRIFNWCLRCQICSELLENSIVYKIHLREHASLPVHTCDVCDRVFNNTYYFAKHKKKHDLEKENSIKQLYEKQTEANPSAGRQVLESEPELNIKPEMPFEVIDEFEDDANVNDDMATPQRDEGMSVESSISSDVDKIKIEATTSIQDIKKEIVEEDLQVEMDYNEFSVVKLEYEDLIERKENSPSELAITAEENSSDSSLDEEIEYAEVEDLLNVKRKRHETRGRKPAVQIEPHLCTKCDKEYDSLYKYLEHLTCHDLKANTCPQCLKTFERTTKLMWHFKIHINQTFLKIKFLKTEEKAGKIFRCRHCKKIVTKDDFFEHWERHYALMDWKSQKKMDVVIVNTDKNNKNLSETMMKNIIDYILGDPKFKRQKICVVCKRTFNRQSDVKRHLVEHLLKDAQVNGERSFFNWSLRCQICSEAFDKASSYKSHLREHASLPIYTCELCDRVFSDSSNFTKHKKVHNLQNYRCEICNKKFQTLPYLEKHMEIHKEKPIKCPCCPVMSYTPSLNRRHIRMHHVKGTKTLCPICSERFHTLKMKWDHLWQVHKLRKEKWDCNLCGSSYRKFKDLKDHYKDVHRKKYLKLMSGNKKDKIKKLLLQANVTVKSEPAEESNEMVDIIN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00237038;
90% Identity: iTF_00237038;
80% Identity: -