Basic Information

Insect: Bombyx mori
Gene Symbol: Prdm15
Assembly: GCA_027497135.1
Location: CP114963.1:11245783-11252381[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 2.1 1.2e+02 3.5 2.5 1 23 456 480 456 480 0.81

2 8 0.0041 0.23 12.0 1.3 3 23 553 573 552 573 0.97

3 8 2.3e-05 0.0013 19.1 0.3 1 23 577 599 577 599 0.98

4 8 0.00028 0.015 15.7 2.7 1 23 604 627 604 627 0.94

5 8 0.66 37 5.1 0.7 1 23 633 656 633 656 0.89

6 8 0.011 0.61 10.7 0.2 2 23 664 686 663 686 0.93

7 8 1.6e-05 0.00092 19.6 0.3 1 23 691 714 691 714 0.93

8 8 5.5e-06 0.00031 21.1 1.0 1 23 723 745 723 745 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	2.1	1.2e+02	3.5	2.5	1	23	456	480	456	480	0.81
2	8	0.0041	0.23	12.0	1.3	3	23	553	573	552	573	0.97
3	8	2.3e-05	0.0013	19.1	0.3	1	23	577	599	577	599	0.98
4	8	0.00028	0.015	15.7	2.7	1	23	604	627	604	627	0.94
5	8	0.66	37	5.1	0.7	1	23	633	656	633	656	0.89
6	8	0.011	0.61	10.7	0.2	2	23	664	686	663	686	0.93
7	8	1.6e-05	0.00092	19.6	0.3	1	23	691	714	691	714	0.93
8	8	5.5e-06	0.00031	21.1	1.0	1	23	723	745	723	745	0.97

Sequence Information

Coding Sequence: ATGGATACCGAAGTACGAATGTATTTCGGGAGATGCAGATGTTGCTTAGAATATGGTTATTTAAAATACATGTTTTTTGAACACAAACATCGAGGACAGGTCGAGATTTACGGCGAAATGTTAAAGAACTGCTTCAATTTTTCTTGGATCCAATTAGACACGGAGGACTATAATCAGATCTGTGATCCGTGCATCAAGAAGCTAAGAGAGGCGTGCAGTTTTAGGAATTTAGTTATAAGATCCCAGAAGCAACTGCTTGATGAAATATGTAATAGTGAAGAACCAGCAATAAAAGTGGAATATATAAATGAAGTGGAACAAGATTCATTATTGGAGCCGGTGCAATGGGAAGGTAATAAAGTAAGTATGACAACTCGAGCAAAGCGGAAGCTACTGAACAGGCAAGCATTTGATGAAGACGACTCTGAGAACCCTGTGAATACCAAAAGAAAAGCACAGGATGACAAATCAAACTACTATGACATCGAAGACAGAGTATTGTATGTCAAATTGGATGAGTTTTCAGGGAAACAAACTGTGGTGCCAAAGTCAGAAGTCCTTGAGATGGATAGTCAAGAAATTGAGGAAATGATGCAGAATAATGATTTACCTGGGAGAGGAGTGTATGAGGAAGTGGAATATTTAGATGAAGAATTCACTGATAATGGTGAACAGGAAAAAAAGGTAAAATCAGTTAGAACATCCCGGAAACGGGCCAAGAAACTTCCTGGAGCTGAACACAATGAAGAACAACTTGGGTACAAAGAGGAGGATCTGAAAAGTGGTGTGGAAGCAGTCAGAAACAACAGGATGTCTAGATTAGAAGCAGTAGCATTCTATAACCTTTCGTTAAAGACTTTGGATGCCAAATTGAACATGCATGAGAAAAGTAAAAGGAAATCTGTATCCAGGAAGAAATCCTTAGTGGTGGTGGAAAATGAAGAAGCCTTGACAGAAGTTCGTCAGGATGATAAAATTGGATTCGAGAAAGGCACATATGTAGAAATAGAGTATTTAGAAGAAGATGCTGCTGATAATGTTCAAGAAGAAAACGATGTGAAACCAGTGGCCAATGTAACCCGGAAGTGGCCCAAGAAACTACCCCGGGCTGAACGTAACAAAAGATACCTTCAGTACACCGAGGATGATCTCCGGAACGCAGTGGACGACGTCAAAAACAATAAAATGACTAGACTAGAAGCAGCAGAGTTCTATAAAGTTCCAAGGAAGACATTAGATGCTAAATTAAGAACGGAGGACGAAAGCATAGACCCAGCTCGCGAAGAAATGTATAAATTCATAAAGGAAATAAAAGAGATATTGACGTTCACGAATGCGACGCCTTACAGAAGCAAAATGACGACCTTCAGCTGCGCCTACTGCACCGAAGTCTATTTCCACGCGGCGGACGAACTCCGCAACCACACGCGTATGAACCACATCGACGAGCGAACGAAGAAGGTCGACCTCATGATGAGACCTCACTCGATGAATGAAACCTTGAAATTAGACATAAACAACCTCATGTGTGTGGTCTGTTGCATCCCGATCAACGACTGGAACGATATGTTCAGGCATTTAAAAAATACACATGGAACAGTCTTCACGTATGCCCACAAACGGCTCATTCCATACATATTGAACCAGGAGCCTGACTGCGTGCTCTGCAAGCAACACTTCACGAACTACGTCCAGCTCGACGTCCACATGAACAGCCACTACGACAACTACGTCTGTGACGATTGCGGCCAGACCTTCATATCGGCTGCCAGGCTAAAGAATCACTCCAAGAAGCACGATTTAGGGAAATACTCGTGCAAATACTGCAACAAAGTGTTTACTCTAAAACATTACGTCAAGAAGCACGAGGCAGTCGTGCACAAATCTAAAGTGCACTACAAGTGTTACCATTGCCCGGAGAGACTGCCAAGCGATAAGGAGAGGAAAGAGCACATTGAAGCTAACCACAGGGAGAAAGTTAAGGAGATAACCTGCGATATTTGTGGCAAGATATTCAATTGGCGTCAGTATTACATTGGGCATCTGAGGAAAGTCCACGGTGATAGGAAGTACGCATGTACAGCTTGTGATAAAAAGTTTGCTCAGCGTGATGACCTAAAAAGACACATTGAGGCAAGACACAAGGGACTACAGCGGATCAAGAACCACATATGTCCGGTTTGCGACAAGAGATATTCCTCGAAATCGGCGCTAGTGACTCACTTCAGAATTCACTCGAATGACGATGAAAAAATTGTCGAAGCTGATAAAATATTTAAATAA
Protein Sequence: MDTEVRMYFGRCRCCLEYGYLKYMFFEHKHRGQVEIYGEMLKNCFNFSWIQLDTEDYNQICDPCIKKLREACSFRNLVIRSQKQLLDEICNSEEPAIKVEYINEVEQDSLLEPVQWEGNKVSMTTRAKRKLLNRQAFDEDDSENPVNTKRKAQDDKSNYYDIEDRVLYVKLDEFSGKQTVVPKSEVLEMDSQEIEEMMQNNDLPGRGVYEEVEYLDEEFTDNGEQEKKVKSVRTSRKRAKKLPGAEHNEEQLGYKEEDLKSGVEAVRNNRMSRLEAVAFYNLSLKTLDAKLNMHEKSKRKSVSRKKSLVVVENEEALTEVRQDDKIGFEKGTYVEIEYLEEDAADNVQEENDVKPVANVTRKWPKKLPRAERNKRYLQYTEDDLRNAVDDVKNNKMTRLEAAEFYKVPRKTLDAKLRTEDESIDPAREEMYKFIKEIKEILTFTNATPYRSKMTTFSCAYCTEVYFHAADELRNHTRMNHIDERTKKVDLMMRPHSMNETLKLDINNLMCVVCCIPINDWNDMFRHLKNTHGTVFTYAHKRLIPYILNQEPDCVLCKQHFTNYVQLDVHMNSHYDNYVCDDCGQTFISAARLKNHSKKHDLGKYSCKYCNKVFTLKHYVKKHEAVVHKSKVHYKCYHCPERLPSDKERKEHIEANHREKVKEITCDICGKIFNWRQYYIGHLRKVHGDRKYACTACDKKFAQRDDLKRHIEARHKGLQRIKNHICPVCDKRYSSKSALVTHFRIHSNDDEKIVEADKIFK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00235801;
90% Identity: iTF_00235801;
80% Identity: iTF_00236575;