Bman005249.1
Basic Information
- Insect
- Bombyx mandarina
- Gene Symbol
- Prdm15
- Assembly
- GCA_003987935.1
- Location
- NW:3597863-3604869[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.027 26 4.1 0.0 2 41 256 295 255 299 0.82 2 2 6.3e-06 0.0061 15.8 0.0 1 35 380 414 380 420 0.92
Sequence Information
- Coding Sequence
- atggaTACCGAAGTACGAATGTATTTCGGGAGATGCAGATGTTGCTTAGAATAtggttatttaaaatacatgttTTTTGAACACAAACATCGAGGACAGGTCGAGATTTACGGCGAAATGTTAAAGAACTGCTTCAATTTTTCTTGGATCCAATTAGACACGGAGGACTATAATCAGATCTGTGATCCGTGCATCAAGAAGCTAAGAGAGGCGTGCAGTTTTAGGAATTTAGTTATAAGATCCCAGAAGCAACTGCTTGATGAAATATGTAATAGTGAAGAACCAGCAATAAAAGTGGAATATATAAATGAAGTGGAACAAGATTCATTATTGGAGCCGGTGCAATGGGAAGGTAATAAAGTAAGTATGACAACTCGAGCAAAGAGGAAGCTACTGAACAGGCAAGCATTTGATGAAGACGAATCTGAGAACCCTGTGAATACCAAAAGAAAAGCACAGGATGACAAATCAAACTACTATGACATCGAAGACAGAGTATTGTATGTCAAATTGGATGAGTTTTCAGGGAAACAAACTGTGGTGCCAAAGTCAGAAGTCCTTGAGATGGATAGTCAAGAAATTGAGGAAATGATGCAGAATAATGATTTACCTGGGAGAGGAGTGTATGAGGAAGTGGAATATTTAGATGAAGAATTCACTGATAATGGTGAACAGGaaaaaaaggtaaaatCAGTTAGAACATCCCGGAAACGGGCCAAGAAACTTCCTGGAGCTGAACACAATGAAGAACAACTTGGGTACAAAGAGGAGGATCTGAAAAGTGGTGTGGAAGCAGTCAGAAACAACAGGATGTCTAGATTAGAAGCAGTAGCATTCTATAACCTTTCGTTAAAGACTTTGGATGCCAAATTGAACATGCATGAGAAAAGTAAAAGGAAGTCTGTATCCAGGAAGAAATCCTTAGTGGTGGTGGAAAATGAAGAAGCCTTGACAGAAGTTCGTCAGGATGATAAAATTGGATTCGAGAAAGGCACATATGTAGAAATAGAGTATTTAGAAGAAGATGCTGCTGATAATGTTCAAGAAGaAAACGATGTGAAACCAGTGGCCAATGTAACCCGGAAGTGGCCCAAGAAACTACCCCGGGCTGAACGTAACAAAAGATACCTTCAGTACACCGAGGATGATCTCCGGAACGCAGTGGACgacgtcaaaaacaataaaatgactaGACTAGAAGCAGCAGAGTTCTATAAAGTTCCAAGGAAGACATTAGATGCTAAATTAAGAACGGAGGACGAAAGCATAGACCCAGCTCGCGAAGAAATGTATAAATTCATAAAGGAAATAAAAGAGATATTGACGTTCACGAATGCGACGCCTTACAGAAGCAAAATGACGACCTTCAGCTGCGCCTACTGCACCGAAGTCTATTTCCACGCGGCGGACGAACTCCGCAACCACACGCGTATGAACCACATCGACGAGCGAACGAAGAAGGTCGACCTCATGATGAGACCTCACTCGATGAATGAAACCTTGAAATTAGACATAAACAACCTCATGTGTGTGGTCTGTTGCATCCCGATCAACGACTGGAACGATATGTTCaggcatttaaaaaatacacatggAACAGTCTTCACGTATGCCCACAAACGGCTCATTCCATACATATTGAACCAGGAGCCTGACTGCGTGCTCTGCAAGCAACACTTCACGAACTACGTCCAGCTCGACGTCCACATGAACAGCCACTACGACAACTACGTCTGTGACGATTGCGGCCAGACCTTCATATCGGCTGCCAGGCTAAAGAATCACTCCAAGAAGCACGATTTAGGGAAATACTCGTGCAAATACTGCAACAAAGTGTTTACTCTAAAACATTACGTCAAGAAGCACGAGGCAGTCGTGCACAAATCTAAAGTGCACTACAAGTGTTACCATTGCCCGGAGAGACTGCCAAGCGATAAGGAGAGGAAAGAGCACATTGAAGCTAACCACAGGGAGAAAGTTAAGGAGATAACCTGCGATATTTGTGGCAAGATATTCAATTGGCGTCAGTATTACATTGGGCATCTGAGGAAAGTCCACGGTGATAGGAAGTACGCATGTACAGCTTGTGATAAAAAGTTTGCTCAGCGTGATGACCTAAAAAGACACATTGAGGCAAGACACAAGGGACTACAGCGGATCAAGAACCACATATGTCCGGTTTGCGACAAGAGATATTCCTCGAAATCGGCGCTAGTGACTCACTTCAGAATTCACTCGAATGACGATGAAAAAATTGTCGAAgctgataaaatatttaaataa
- Protein Sequence
- MDTEVRMYFGRCRCCLEYGYLKYMFFEHKHRGQVEIYGEMLKNCFNFSWIQLDTEDYNQICDPCIKKLREACSFRNLVIRSQKQLLDEICNSEEPAIKVEYINEVEQDSLLEPVQWEGNKVSMTTRAKRKLLNRQAFDEDESENPVNTKRKAQDDKSNYYDIEDRVLYVKLDEFSGKQTVVPKSEVLEMDSQEIEEMMQNNDLPGRGVYEEVEYLDEEFTDNGEQEKKVKSVRTSRKRAKKLPGAEHNEEQLGYKEEDLKSGVEAVRNNRMSRLEAVAFYNLSLKTLDAKLNMHEKSKRKSVSRKKSLVVVENEEALTEVRQDDKIGFEKGTYVEIEYLEEDAADNVQEENDVKPVANVTRKWPKKLPRAERNKRYLQYTEDDLRNAVDDVKNNKMTRLEAAEFYKVPRKTLDAKLRTEDESIDPAREEMYKFIKEIKEILTFTNATPYRSKMTTFSCAYCTEVYFHAADELRNHTRMNHIDERTKKVDLMMRPHSMNETLKLDINNLMCVVCCIPINDWNDMFRHLKNTHGTVFTYAHKRLIPYILNQEPDCVLCKQHFTNYVQLDVHMNSHYDNYVCDDCGQTFISAARLKNHSKKHDLGKYSCKYCNKVFTLKHYVKKHEAVVHKSKVHYKCYHCPERLPSDKERKEHIEANHREKVKEITCDICGKIFNWRQYYIGHLRKVHGDRKYACTACDKKFAQRDDLKRHIEARHKGLQRIKNHICPVCDKRYSSKSALVTHFRIHSNDDEKIVEADKIFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00236985; iTF_00236187; iTF_00236575;
- 90% Identity
- iTF_00236985; iTF_00236187; iTF_00236575;
- 80% Identity
- iTF_00236187;