Basic Information

Insect: Bombyx mori
Gene Symbol: -
Assembly: GCA_027497135.1
Location: CP114962.1:3154358-3161188[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.12 6.7 7.4 1.0 1 23 246 268 246 268 0.98

2 9 0.032 1.8 9.2 1.3 1 23 275 297 275 297 0.98

3 9 6.6e-05 0.0037 17.7 1.7 2 23 316 338 315 338 0.96

4 9 1.4e-06 7.5e-05 23.0 0.3 1 23 347 369 347 369 0.98

5 9 7.3e-05 0.0041 17.5 2.2 1 23 374 396 374 396 0.98

6 9 0.0097 0.54 10.8 2.8 1 21 403 423 403 428 0.93

7 9 0.065 3.6 8.2 0.5 1 23 433 456 433 456 0.91

8 9 0.0011 0.063 13.8 1.2 1 23 462 484 462 484 0.97

9 9 1.6e-05 0.0009 19.6 1.8 1 22 493 514 493 514 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.12	6.7	7.4	1.0	1	23	246	268	246	268	0.98
2	9	0.032	1.8	9.2	1.3	1	23	275	297	275	297	0.98
3	9	6.6e-05	0.0037	17.7	1.7	2	23	316	338	315	338	0.96
4	9	1.4e-06	7.5e-05	23.0	0.3	1	23	347	369	347	369	0.98
5	9	7.3e-05	0.0041	17.5	2.2	1	23	374	396	374	396	0.98
6	9	0.0097	0.54	10.8	2.8	1	21	403	423	403	428	0.93
7	9	0.065	3.6	8.2	0.5	1	23	433	456	433	456	0.91
8	9	0.0011	0.063	13.8	1.2	1	23	462	484	462	484	0.97
9	9	1.6e-05	0.0009	19.6	1.8	1	22	493	514	493	514	0.94

Sequence Information

Coding Sequence: ATGGCGTCGTTCCTATGTTTCGTTTGCCATAGCACGATCAACTCTATAACAAACGAGGCGACGCGCGAGAAATATCGCGAAGTCATAGGAATGAATTTATGTCAGGATTCGCATTTGTGCCATATATGCAGACACATACTCAACAAATTATGGTTATTCAGATCTAAATGTCTGAAGAGGAGTTCTGAGTATCCTAGTTTGTTCAGTGAAGATGTTCCTATACGTTTGCAAAGAACCGACACGGAATGCCACATACTGTGCCCGAAGTCTGACTCATGCCAAACCTTACAGACCGGGTATAGCTCCCAATACGTTTGTGATGAACGAAATTTGGACGAAAATCGTAAAGACGCAGATGATTATCACGTACACCAGCTGCAAGATGAAAGGAATTACATTGATTACTACGAAGATCTAGATGCGCTAAATGAATTTTACGGCAACGATAATCCGATTGTTGATAAAGGTGCTAACGCTTTAAACGTTTTGGACGATGATAATATTGATGGCGAAATCGAAGGTAGCGTGCCAGAACAAATAAAAATTCAAAATGAATTTATTGAAGATCACGTGCAGATGATAAATGATGATGGAAATGAGGGATCAGCTAAATTGGACGATACGAAAACGAGGAAGGTCAAAAACAAGAGGCAGAAAAAGATTTTAACTGATCTAGAAGAGCAGAAAGCGGTTTTGGACGCTATGAGGAAAGGGAAGAAGTATTTAGAGGCGGAATTCAAATGTTATAATTGCGCTGTTGGATTCCTATTTAAGGACACTTATCAGGCGCATATGATGAGACACGAAGAGTCAAACGGTGAATATCGTTGCGAGGTGTGCACCCTGCGTTTTGCGTGTGCGTCCGTATTGCGCGCGCACAGCAAGACTCATAGTCTAGAACGTTCTAGACGACGGGTTAAAGTCGACGCGAACGGTACGCAAGTCCCTTGTCACTTGTGCGGAAGGATTTTCATGGATACGACAAATTTGAAACAGCACTTAAAGAGATTCCACAATCAGAAGAACAATAACCGCACGTATTCGTGCAGCGTCTGCGGGAAGAGCTACAGCAACCAGGGAGCGGTCCGGACACATATGATTAAACACATCAACAGAAAGTTCAACTGCGACAAATGCCCCTCGACATTCAGCAGCCCGTACACCCTGAACCAGCACAAGAAGAAGCATGATGACGTCACAGCGCTGCATCATTGTGAGACGTGTGACGTCACGTACAACAGCCGGAAGAGTCTTATGGCCCATAAGAGGAATACTTTTGCACATCAGCAGACTGTTTTCGCCTGTCGGGCGTGCAACAGGCTGTGTCCTACGAAACGCTCCCTGGAATCGCACATGGCCGCCGTCCACTCGGCGACGAAGGACTTCTGTTGCGAAGTCTGCGACGCTAGGTACACGAATCGAAAGTCTTGGGTGCGACACGTGGCGACCCACGACCCGAGCAGAGCCAAAGAGGTCTTCATATGCTACCGGTGCCCGAAGACTTTTAAGTCCCGTAGCATGCTAACCCGACATCTGAAGAAAGTTTGCGAGAAAGAAAAGTTGATAATCGAAGAAAATAATTACTATCAAGAAAACGTTTCTAATTTATAA
Protein Sequence: MASFLCFVCHSTINSITNEATREKYREVIGMNLCQDSHLCHICRHILNKLWLFRSKCLKRSSEYPSLFSEDVPIRLQRTDTECHILCPKSDSCQTLQTGYSSQYVCDERNLDENRKDADDYHVHQLQDERNYIDYYEDLDALNEFYGNDNPIVDKGANALNVLDDDNIDGEIEGSVPEQIKIQNEFIEDHVQMINDDGNEGSAKLDDTKTRKVKNKRQKKILTDLEEQKAVLDAMRKGKKYLEAEFKCYNCAVGFLFKDTYQAHMMRHEESNGEYRCEVCTLRFACASVLRAHSKTHSLERSRRRVKVDANGTQVPCHLCGRIFMDTTNLKQHLKRFHNQKNNNRTYSCSVCGKSYSNQGAVRTHMIKHINRKFNCDKCPSTFSSPYTLNQHKKKHDDVTALHHCETCDVTYNSRKSLMAHKRNTFAHQQTVFACRACNRLCPTKRSLESHMAAVHSATKDFCCEVCDARYTNRKSWVRHVATHDPSRAKEVFICYRCPKTFKSRSMLTRHLKKVCEKEKLIIEENNYYQENVSNL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00236174;
90% Identity: iTF_00236174;
80% Identity: -