Basic Information

Insect: Bombyx mandarina
Gene Symbol: -
Assembly: GCA_003987935.1
Location: NW:89568-97247[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.1 4.7 7.4 1.0 1 23 252 274 252 274 0.98

2 9 0.028 1.2 9.2 1.3 1 23 281 303 281 303 0.98

3 9 5.7e-05 0.0026 17.7 1.7 2 23 322 344 321 344 0.96

4 9 1.2e-06 5.3e-05 23.0 0.3 1 23 353 375 353 375 0.98

5 9 6.3e-05 0.0028 17.5 2.2 1 23 380 402 380 402 0.98

6 9 0.0083 0.38 10.8 2.8 1 21 409 429 409 434 0.93

7 9 0.056 2.5 8.2 0.5 1 23 439 462 439 462 0.91

8 9 0.00097 0.044 13.8 1.2 1 23 468 490 468 490 0.97

9 9 1.4e-05 0.00063 19.6 1.8 1 22 499 520 499 520 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.1	4.7	7.4	1.0	1	23	252	274	252	274	0.98
2	9	0.028	1.2	9.2	1.3	1	23	281	303	281	303	0.98
3	9	5.7e-05	0.0026	17.7	1.7	2	23	322	344	321	344	0.96
4	9	1.2e-06	5.3e-05	23.0	0.3	1	23	353	375	353	375	0.98
5	9	6.3e-05	0.0028	17.5	2.2	1	23	380	402	380	402	0.98
6	9	0.0083	0.38	10.8	2.8	1	21	409	429	409	434	0.93
7	9	0.056	2.5	8.2	0.5	1	23	439	462	439	462	0.91
8	9	0.00097	0.044	13.8	1.2	1	23	468	490	468	490	0.97
9	9	1.4e-05	0.00063	19.6	1.8	1	22	499	520	499	520	0.94

Sequence Information

Coding Sequence: ATGGTTTCAACGATGGCGTCGTTCCTATGTTTCGTTTGCCATAGCACGATCAACTCTATAACAAACGAGGTGACGCGCGAGAAATATCGCGAAGTAATAGGAATGaatTTATGTCAGGATTCGCATTTGTGCCATATATGCAGACACATACTCAACAAATTATGGTTATTCAGATCTAAATGTCTGAAGAGGAGTTCTGAGTATCCTAGTTTGTTCAGTGAAGATGTTCCTATACGTTTGCAAAGAACCGACACGGAATGCCACATACTGTGCCCGAAGTCTGACTCATGCCAAACCTTACAGACCGGGTATAGCTCCCAATACGTTTGTGATGAACGAAATTTGAACGAGAATCGTAAAGACGCAGATGATTATCACGTACACCAGCTGCAAGATGAAAGGAATTACATTGATTACTACGAAGATCTAGATGCGCTAAATGAATTTTACGGTAACGATAATCCGATTGTTGATAAAGAGAAAGGTGCTAACGCTTTAAACGGTTTAGACGATGATAATATTGATGGCGAAATCGAAGGTAGCGTGCcagaacaaataaaaattcaaaatgaatttattgaagATCACGTGCAGATGATAAATGATGATGGAAATGAGGGATCAGCTAAATTGGACGATACGAAAACGAGGAAGGTCAAAAACAAGAGGCAGAAAAAGATTTTAACTGATCTAGAAGAGCAGAAAGCGGTTTTGGATGCTATGAGGAAAGGGAAGAAGTATTTAGAGGCGGAATTCAAATGTTATAATTGCGCTGTTGGATTCCTATTTAAGGACACTTATCAGGCGCATATGATGAGACACGAAGAGTCAAATGGTGAATATCGTTGCGAGGTGTGCACCCTACGTTTTGCGTGTGCGTCCGTTTTGCGCGCGCACAGCAAGACTCATAGCCTAGAACGTTCTAGACGACGGGTTAAAGTCGACGCGAACGGTACGCAAGTCCCTTGTCACTTGTGCGGAAGGATTTTCATGGATACGACAAATTTGAAACAGCACCTAAAGAGATTCCACAATCAGAAGAACAATAACCGCACGTATTCGTGCAGCGTCTGCGGGAAGAGCTACAGCAACCAGGGAGCGGTCCGGACACATATGATTAAACACATCAACAGAAAGTTCAACTGCGACAAATGCCCATCGACATTCAGCAGTCCGTACACCCTGAACCAGCACAAGAAGAAGCATGATGACGTCACAGCGCTGCATCATTGTGAGACGTGTGACGTCACGTACAACAGCCGGAAGAGTCTCATGGCCCACAAGAGGAATACCTTTGCGCATCAGCAGACTGTTTTCGCCTGTCGGGCGTGCAACAGGCTGTGTCCTACGAAACGCTCCCTGGAATCGCACATGGCCGCCGTCCACTCGGCGACGAAGGACTTCTGTTGCGAAGTCTGCGACGCTAGGTACACGAATCGAAAGTCTTGGGTGCGACACGTGGCGACCCACGACCCGAGCAGAGCCAAAGAGGTCTTCATATGCTACCGGTGCCCGAAGACTTTTAAGtcccGAAGCATGCTAACCCGGCATCTGAAGAAAGTTTGCGAGAAAGAAAAGTTGATaatcgaagaaaataattactatcaAGAAAACGTTTCTAATTTATAA
Protein Sequence: MVSTMASFLCFVCHSTINSITNEVTREKYREVIGMNLCQDSHLCHICRHILNKLWLFRSKCLKRSSEYPSLFSEDVPIRLQRTDTECHILCPKSDSCQTLQTGYSSQYVCDERNLNENRKDADDYHVHQLQDERNYIDYYEDLDALNEFYGNDNPIVDKEKGANALNGLDDDNIDGEIEGSVPEQIKIQNEFIEDHVQMINDDGNEGSAKLDDTKTRKVKNKRQKKILTDLEEQKAVLDAMRKGKKYLEAEFKCYNCAVGFLFKDTYQAHMMRHEESNGEYRCEVCTLRFACASVLRAHSKTHSLERSRRRVKVDANGTQVPCHLCGRIFMDTTNLKQHLKRFHNQKNNNRTYSCSVCGKSYSNQGAVRTHMIKHINRKFNCDKCPSTFSSPYTLNQHKKKHDDVTALHHCETCDVTYNSRKSLMAHKRNTFAHQQTVFACRACNRLCPTKRSLESHMAAVHSATKDFCCEVCDARYTNRKSWVRHVATHDPSRAKEVFICYRCPKTFKSRSMLTRHLKKVCEKEKLIIEENNYYQENVSNL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00236967;
90% Identity: iTF_00236967;
80% Identity: -