Bmor003543.1
Basic Information
- Insect
- Bombyx mori
- Gene Symbol
- zfy1
- Assembly
- GCA_027497135.1
- Location
- CP114962.1:2241584-2260814[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2.8 1.5e+02 3.1 0.6 1 23 475 498 475 498 0.95 2 11 0.001 0.057 13.9 0.2 1 23 505 527 505 527 0.99 3 11 0.031 1.7 9.3 0.8 1 23 531 554 531 554 0.97 4 11 0.89 50 4.7 4.8 2 23 562 583 561 583 0.96 5 11 2.2e-05 0.0013 19.1 1.7 1 23 587 610 587 610 0.91 6 11 0.00025 0.014 15.8 0.8 1 23 616 638 616 638 0.97 7 11 0.03 1.7 9.3 2.3 3 21 649 667 648 672 0.93 8 11 8.7e-05 0.0049 17.3 0.6 1 20 680 699 680 700 0.96 9 11 0.0002 0.011 16.1 1.1 1 23 708 731 708 731 0.98 10 11 2.5e-06 0.00014 22.2 3.0 3 23 740 760 739 760 0.98 11 11 1.9e-06 0.00011 22.5 1.9 1 23 766 789 766 789 0.95
Sequence Information
- Coding Sequence
- ATGAATGTAAAAAACGATTCTAAGTCTTTGAATGAACTTTGCGTGGTGTGCCTCTGTGTGGGGCGGTCTCTCCGAGTTATCACCGAAGACAAGATCCTGAAATACTACTTGGACGCTCTGCAAGAGATACCTTTAAATAGGGTATCATCAGTTCTGCTAGTGTGCTGGGAGTGTGAGGTGCTGCTGAAGAGGGCTGTACAGTTCAGACAGCAGGTCCAGGATTCCCACAGGATACTGCAAACCTACACTAAAGAGAATTTAAACGAATATTTGCTGACCGAAGTATCAAGGCCGCCGCGTTTGAAGATCACCAAGAACGAGATCATCGCGATATCGCCGCACGTGGATTGTTCTAGAAGACCAAATGTTCGTGTAGATTTTAAAGATGAAGTCAAAAACGAAGTGATCCAAAATTTCATCGGTTCTGTTGAACGCGAACAAGAAGATGCCTTGGTAAACGTCAGGAGTGTGTCGAAGAGGAAATCCAAACAATGGACTCGAAAGAAATTGAAGAGAAACAGAGAGAAATTCTCCGAGTGCTTCCTTAATGAAGTGTCATATGCAACCAGCGGCACTCGCAATCGGAAGGACCTGCAGAGCGTGCTTGTAAAAGATGAAGTTAAAAATGAAAAATCTGGCAGCGATATTCGAATGTCTGACGAGTGTGTAATAGACGCGGACTTCTCTGATGACTCTACAGAAGAAATAGGATTGAAAGATAACAAAAATGGCGATAAATTTAGTGGATCTGAGGGAGATATCGAAACCGCCTTCGAGGATGACAAATTCACCGAGTGCTTCCTCAATGAAGTGTCATATGCAACCAGCAGCACTCGCAATCGGAAGGACCTGCAGAGCGTGTTCGTAAAGGATGAAGTTAAAAATGAAAATTCTGACAGCGATATTCAAATGTCGGACGATTGTGTAATGGACCCGGACTTCTCTGATGACTCTGGAGAAGAAATGGGATTGAAAGAAAAGAAAAGTAGCGATAAATTTAGGGGATCTAGGGGAGATAATGAAACCGCCTTCAAGAATAACAAAATTCAGAACATGAGCGATACGGGGGGCATACCATTGAATGTGAATATTGAAGACAATGCAACATTGGATTTGCAGTTTGATTGTCTGAAAGTGGAGATTGACAATGGGCGGTCGCGCGATGAGGCCGGGAGCGGGATTGATCCGGGGACTGCGATGCACGATCACCCATCGGCCAAAGTCCCGGGCACGTTGAAGAGGAAGACCAAACGTTGCCCGGCGAAGAAGACGAAGAAAGCGAAAGGCGTCAAAGGAAACGGTGTAAACAAAAAGGTGAAAGGATCAGAAGAGAAGCTTTATACTACGATCGAGCTTACGCACGAGCAGATGCTCGACGAGAGGAACGCCGCTCACGGCTCCGAGAGCTTCCAAAGTTCGGCCTACAAATGCGAAACTTGCATTCTCGGCTTTCAGTACCGGCGGCCTTACGAAGCTCATCTAAACTCTAGACACGCAAAGACCCTCGGCGATTACGTATGTCCTATATGCAAGACGGTGGTGATGTCCGTGGACTCTTTCACGGCGCATTACAGACGTCACATGAGAAGGTTCCAGTGCAACTTGTGCGAGAAGAGAACCATAGACAGGGGCCGTATCAAGCAGCATCTGTATACGGAACACGGGGTCGTGATGTCGACGATCAAGTGTAAGCAGTGCGGGCACGTTTCCCGCTCCTTAGACAACCACATACACCACTTGGACACGCACAAGGGAAGGTTCAAATGCAAAGAGTGCACCAAAACCTTCAAACACAGAGGGGGACTGAAGAATCATGCGATCGCGGTGCACGAACTCAAGAATAACTTCCCGTGCAGCGTGTGTCAGAAGGTGTTCCGCTGGAAGAACAGCCTGAAGAGGCACACGGAGGTGCATCTAGCCAAGGACACTACAGAGGCGGCCTACTGTGAATCCTGTGGTATAGGGTTCAAGTCGGTATGCTCATTTCAAAGACACATGAAGAATAGCTTGAAGCACGTGACACACGATCAACGGAAATACGTGTGCGATCATTGCAACCGAAGATTCATAGACAAGACGAAACTCCGAGATCACATTGAATGTAAGCACATGCATAAGACGTACCAGTGCCACATATGTTTGAAGCCATCTAAGAACAGAGTGAATCTAGATCAGCACATAAGGAACGTGCACAAAGGGCGACCGAATAATAAAATATGCCATCATTGTGGCAAAGGATTTCCGACCAAAGTCCAGCTCGACTCGCACATGCGTACGCACACGGGAGAGCGTCCCTTCATATGCGAGTATTGCCCGACCACGTTCACACAGAAATCGAATCTATACAAGCATTACAAACAGGTACACCTCAATATAAAATCGAAGAGGTATCCGCCGGTCAAGAAACCGAAAGACGCGCTAAACTGCCAACCGTCCATCGGGGGTTCGAGAGAATCAATGGCACGACGTACCCGCCCGAAAGAGGCGACCCCCCCCCCCAATCCCACTCTATGTGGGGTCGGCGCGGTCCGCTCATGCTACACAAGCATCCGGCATGACTTGTCGACGACCGGACGCCTGCCCCAAGTCGATCCCCCCGGGTAA
- Protein Sequence
- MNVKNDSKSLNELCVVCLCVGRSLRVITEDKILKYYLDALQEIPLNRVSSVLLVCWECEVLLKRAVQFRQQVQDSHRILQTYTKENLNEYLLTEVSRPPRLKITKNEIIAISPHVDCSRRPNVRVDFKDEVKNEVIQNFIGSVEREQEDALVNVRSVSKRKSKQWTRKKLKRNREKFSECFLNEVSYATSGTRNRKDLQSVLVKDEVKNEKSGSDIRMSDECVIDADFSDDSTEEIGLKDNKNGDKFSGSEGDIETAFEDDKFTECFLNEVSYATSSTRNRKDLQSVFVKDEVKNENSDSDIQMSDDCVMDPDFSDDSGEEMGLKEKKSSDKFRGSRGDNETAFKNNKIQNMSDTGGIPLNVNIEDNATLDLQFDCLKVEIDNGRSRDEAGSGIDPGTAMHDHPSAKVPGTLKRKTKRCPAKKTKKAKGVKGNGVNKKVKGSEEKLYTTIELTHEQMLDERNAAHGSESFQSSAYKCETCILGFQYRRPYEAHLNSRHAKTLGDYVCPICKTVVMSVDSFTAHYRRHMRRFQCNLCEKRTIDRGRIKQHLYTEHGVVMSTIKCKQCGHVSRSLDNHIHHLDTHKGRFKCKECTKTFKHRGGLKNHAIAVHELKNNFPCSVCQKVFRWKNSLKRHTEVHLAKDTTEAAYCESCGIGFKSVCSFQRHMKNSLKHVTHDQRKYVCDHCNRRFIDKTKLRDHIECKHMHKTYQCHICLKPSKNRVNLDQHIRNVHKGRPNNKICHHCGKGFPTKVQLDSHMRTHTGERPFICEYCPTTFTQKSNLYKHYKQVHLNIKSKRYPPVKKPKDALNCQPSIGGSRESMARRTRPKEATPPPNPTLCGVGAVRSCYTSIRHDLSTTGRLPQVDPPG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00236104;
- 90% Identity
- iTF_00236104;
- 80% Identity
- -