Basic Information

Insect: Bombyx mori
Gene Symbol: -
Assembly: GCA_027497135.1
Location: CP114959.1:13238999-13248413[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 1.2 64 4.3 0.6 1 23 81 104 81 104 0.93

2 20 0.61 34 5.2 0.3 3 23 109 129 107 129 0.95

3 20 0.033 1.9 9.2 0.1 2 23 133 155 132 155 0.95

4 20 0.0096 0.53 10.9 0.1 1 21 405 425 405 426 0.94

5 20 0.012 0.66 10.6 0.5 2 23 436 457 435 457 0.93

6 20 2.5 1.4e+02 3.3 0.3 1 23 473 496 473 496 0.90

7 20 0.0015 0.086 13.4 1.7 1 23 505 528 505 528 0.97

8 20 9.9 5.5e+02 1.4 3.2 1 22 540 561 540 563 0.89

9 20 4.4 2.4e+02 2.5 0.4 8 23 579 595 576 595 0.89

10 20 0.052 2.9 8.6 0.8 2 23 606 628 605 628 0.92

11 20 0.4 22 5.8 2.9 1 23 633 656 633 656 0.96

12 20 7.3e-05 0.0041 17.5 2.9 1 23 662 684 662 684 0.97

13 20 0.0011 0.061 13.8 1.1 2 23 692 713 691 713 0.96

14 20 8.6e-05 0.0048 17.3 2.3 1 23 718 740 718 740 0.96

15 20 0.00014 0.0076 16.7 1.2 1 23 746 768 746 768 0.98

16 20 6.7e-06 0.00037 20.8 1.5 1 23 774 796 774 796 0.98

17 20 0.0023 0.13 12.8 3.5 2 23 803 824 803 824 0.98

18 20 0.00029 0.016 15.7 0.5 2 23 832 854 831 854 0.97

19 20 5.9e-05 0.0033 17.8 0.2 1 23 859 881 859 881 0.98

20 20 0.00035 0.02 15.4 3.9 1 23 887 910 887 910 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	1.2	64	4.3	0.6	1	23	81	104	81	104	0.93
2	20	0.61	34	5.2	0.3	3	23	109	129	107	129	0.95
3	20	0.033	1.9	9.2	0.1	2	23	133	155	132	155	0.95
4	20	0.0096	0.53	10.9	0.1	1	21	405	425	405	426	0.94
5	20	0.012	0.66	10.6	0.5	2	23	436	457	435	457	0.93
6	20	2.5	1.4e+02	3.3	0.3	1	23	473	496	473	496	0.90
7	20	0.0015	0.086	13.4	1.7	1	23	505	528	505	528	0.97
8	20	9.9	5.5e+02	1.4	3.2	1	22	540	561	540	563	0.89
9	20	4.4	2.4e+02	2.5	0.4	8	23	579	595	576	595	0.89
10	20	0.052	2.9	8.6	0.8	2	23	606	628	605	628	0.92
11	20	0.4	22	5.8	2.9	1	23	633	656	633	656	0.96
12	20	7.3e-05	0.0041	17.5	2.9	1	23	662	684	662	684	0.97
13	20	0.0011	0.061	13.8	1.1	2	23	692	713	691	713	0.96
14	20	8.6e-05	0.0048	17.3	2.3	1	23	718	740	718	740	0.96
15	20	0.00014	0.0076	16.7	1.2	1	23	746	768	746	768	0.98
16	20	6.7e-06	0.00037	20.8	1.5	1	23	774	796	774	796	0.98
17	20	0.0023	0.13	12.8	3.5	2	23	803	824	803	824	0.98
18	20	0.00029	0.016	15.7	0.5	2	23	832	854	831	854	0.97
19	20	5.9e-05	0.0033	17.8	0.2	1	23	859	881	859	881	0.98
20	20	0.00035	0.02	15.4	3.9	1	23	887	910	887	910	0.97

Sequence Information

Coding Sequence: ATGAGTTCCGATTCTGAAGACGAACCACTTTCGGTACTAGCAGCAAAAAGGAGAGCTCACCCTGAGACCAAAGAATTGATACTGCCGGAAGCGATTGTCATAGAAACGAGAAAGAGAAAGAAGAAAAAATATGTCAACACTAAAGGCCTAAGTATTAGCATTCAGCCAGCAAAACCGATTATCATTGAGAGACCTGTAGATGTTTGGCTGTATTTAAAAGATCTCAGTCCGGCAGGCCCTTATAGCTGCTTATTATGTTCCTTTTGGTTCACAAATCGCTCCAGACTTGTTGTTCATTACATTTTGAACCATAAAAAGGATTTCTGTGGAATATGCAGATATTTTGTCCCGAACCGAGAATCATGGACTTCTCACCTGCAGTTTCATACTCCATGGCCATGTTCACAATGTATACAAAACTTTGCAACTGAAAAATTACTAAGGGATCACATGAGCACTGCACATAATTTGGTGCACTGCCGATTATGCCATTTCCGTGTTGCTGATGATGACCTTTATAATTCACATTTATTTCAAAAGCATAATATTACAAATACATCAACAAAATCGAGCGACATTCTCTGGGATATTCAGTACAAAGGTGCTCCAAAGTTTGCTTGTCGTTTATGCTCCAAACCCAACGTGTTAAGTCGTACCTTCTTTAATCATTATATGGGGTACCACCATTTCACGCTTAAATGCTTCACTCAAATCATATCTGGTACTGATCCCCCATTTGATGTAAACGGCGCGGACTTAAGTAGCGAGTTTGTGAGTAATGAGTTGAGTACTAAAACTGCAGTAGGCTATGTAGATCTTGATAAAGAAACTCATTTAAAAATAGCGATACAAGAGAAGCCCCAGATTTCAATGGATGTGAAAGATGAAGTGGTGAGCGATGAAGATACTAAATCAGAGGAAGTGAATGCAAAATGTGAAAAGGAAGAGAGTATAGTAAAGAATTACAAAGGAGATGAAGACTTTGATGTGACTCTTATGGAGATGATAGTTTTGCAAAAATGCTACTTAAACCACATAGATGAACTTTTAAATGACAAAAATGGTGTTACGAAGAATTCGTATATTGCTTATGACAAGGCATTGGACGAAATGGAAAACTTTGAATGTGCAATATGTAAATCAATAATGACTGATGTCCTAGATTATTATCACCACCTTACCAAAATGCATATAACTAAATGCACACCATACTATATGTGTAGGGTTTGTTCTAACACATTTGAAACGTTATCTGATTTGGAAAGTCACGTAATGCAGGAAATTGGTGAATTTGATGACCTGTGGATATGTCAATTCTGCGACAAAGAATTCGAAAATCGTGTGACCACTAGACGGCATCTAGAAGATCATTTGCAAGAGATGGAATATGATAATTGTTTCAGTCCTCATTTGGGTTTCAAGTGCAGATATTGTCCAATATTGTTCTGGAATGAGGGAGACAGAGAAACTCACCAGATTAAAGTGCATTTCAGTATGCACAGAGATGATTATTATAAATGTGAAAGCTGTGATAAGCTTTTCAGTGATCAGGTTTGGTTCTTACATCATTACTTGTCAGAACACCAAGAAAGCAACAGTAAAGTACCAACATTCCTTTATAAATGCTGTTTGTGTTTATTTTGCTTCCCGAGCATTGATGCTGTCCGCAGTCACTTCAGTGCTGAACATCCGGAAGCGAGGAAGGTCTTCTGTTCGCTACCCCCTTGTAAATATAAACCACTGAGCCAAAGGAAGTCTTTTAAAATTCACTTGAAGACCCTGCACTCTCCGAAGTCCCGCGGCGGGGGCTTAGTGGAATGTCCCGTCTGCAGTCGAGATTTCAAAAGTCAGAAAGCTTGCAACGCCCACATCACGCAAATGCATGGCATCGGCCGATACAAGTGTAAGCTGTGCAAGGAATCCCTTCATTCTTCGGATGAAAGGAAACTCCACTATCTGATCCGTCACCCGGGGCAGCACCCGTACACGTGCACGCAGTGCGGCAAGTCGTTCCAGTACAAGTCATCATTGTACATGCACAAGCAGGAGCACATGCCCAACAGACAGAACTTAACGTGCAATTATTGTAACAAGGTGTTCTTGAAGAAGGACTCGTTCCGCGAGCACCTACTGATCCACGAGGGTCCGCAGCACGCCTGCTCCTACTGCCCCATGCGGTTCGTGCAGCGCTCCAACATGCTGCGCCACGAGCGGAGACACACCGGCGAGCGGCCCTACGCCTGTCCGCACTGCGATCGGACCTTCGCGGACAAGGGAGCCTGCAACGCGCACGTCAGGTCGCACTCCAGAGAGACTATGTACGCTTGTATGTACTGTGGTCAGACTTTTGTACAGAAATCAAAACTAACGTACCACGTGAGGAAACACACGGGGGAAAATCTAGAGACGTGTTCCGTGTGTTCGAAGTTGTTCACAAGCGTCTGCTCCCTACGCGAACACATGAAGACGCACGAAGAAAAGACATTCAACGTTAAATGTCCTTTATGTGACAAGAAATACCAAGACGAGCGTTACATGCTGCGTCACCTGCGCACGGCGCACACGCGGGCGCGTTTCCCGTGTCCGCTGTGCGGGAAGTGCCTCAGCAGCTCCGTCGGGCTGAGGCTGCACGTCAtcacgcacgctgaactcagcatgttccatTGCAAGGTCTGCCCGAAAGGTTTCTCGGTGAAGAAGACGATGATGAAACATCTCCGTCGACGTCACGGCCTCAAAGGGACCGAATTGAACATTACGGATTATTATAACAAACTGGATCCCAGAGACTGCAAGCTCGGCCTCGACGAGGAGGTGATGACCAGCATCTTCGGTCCGCCGAAGAGGATCGTTAACGACGTCCTGGTCGGGGACTTTGTTACTGTGCACAACCAGAGGATCTCGAAGGCCGCGCGTCAGGCCGAGGCTTCCAAGTCTGATGAAGATGATACCGAGGAAAACGAACCGACAGACAACGACGCGCCCGAACCGGAGGAGAGTGACCGCGAGAGCCAAGAAGAAGTGACCAAACAGCATTTCGTTAGTATCAAAATGGAGAAAATTGACAGCGATACGGAAAACACACAGAACACAGTCGAACTGGAGCCCACTGATTTTGTCAGCGTCAAAATCGAACCCCTAGATTCGATTGAGGACATCAACGATTGa
Protein Sequence: MSSDSEDEPLSVLAAKRRAHPETKELILPEAIVIETRKRKKKKYVNTKGLSISIQPAKPIIIERPVDVWLYLKDLSPAGPYSCLLCSFWFTNRSRLVVHYILNHKKDFCGICRYFVPNRESWTSHLQFHTPWPCSQCIQNFATEKLLRDHMSTAHNLVHCRLCHFRVADDDLYNSHLFQKHNITNTSTKSSDILWDIQYKGAPKFACRLCSKPNVLSRTFFNHYMGYHHFTLKCFTQIISGTDPPFDVNGADLSSEFVSNELSTKTAVGYVDLDKETHLKIAIQEKPQISMDVKDEVVSDEDTKSEEVNAKCEKEESIVKNYKGDEDFDVTLMEMIVLQKCYLNHIDELLNDKNGVTKNSYIAYDKALDEMENFECAICKSIMTDVLDYYHHLTKMHITKCTPYYMCRVCSNTFETLSDLESHVMQEIGEFDDLWICQFCDKEFENRVTTRRHLEDHLQEMEYDNCFSPHLGFKCRYCPILFWNEGDRETHQIKVHFSMHRDDYYKCESCDKLFSDQVWFLHHYLSEHQESNSKVPTFLYKCCLCLFCFPSIDAVRSHFSAEHPEARKVFCSLPPCKYKPLSQRKSFKIHLKTLHSPKSRGGGLVECPVCSRDFKSQKACNAHITQMHGIGRYKCKLCKESLHSSDERKLHYLIRHPGQHPYTCTQCGKSFQYKSSLYMHKQEHMPNRQNLTCNYCNKVFLKKDSFREHLLIHEGPQHACSYCPMRFVQRSNMLRHERRHTGERPYACPHCDRTFADKGACNAHVRSHSRETMYACMYCGQTFVQKSKLTYHVRKHTGENLETCSVCSKLFTSVCSLREHMKTHEEKTFNVKCPLCDKKYQDERYMLRHLRTAHTRARFPCPLCGKCLSSSVGLRLHVITHAELSMFHCKVCPKGFSVKKTMMKHLRRRHGLKGTELNITDYYNKLDPRDCKLGLDEEVMTSIFGPPKRIVNDVLVGDFVTVHNQRISKAARQAEASKSDEDDTEENEPTDNDAPEPEESDRESQEEVTKQHFVSIKMEKIDSDTENTQNTVELEPTDFVSVKIEPLDSIEDIND

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00236075;
90% Identity: iTF_00236075;
80% Identity: -