Bman004104.1
Basic Information
- Insect
- Bombyx mandarina
- Gene Symbol
- -
- Assembly
- GCA_003987935.1
- Location
- NW:1637805-1650456[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 1.1 48 4.2 0.6 1 23 81 104 81 104 0.93 2 22 0.55 25 5.1 0.3 3 23 109 129 107 129 0.95 3 22 0.03 1.4 9.1 0.1 2 23 133 155 132 155 0.95 4 22 0.0088 0.4 10.8 0.1 1 21 405 425 405 426 0.94 5 22 2.6 1.2e+02 3.0 0.3 2 13 436 447 435 449 0.86 6 22 0.0088 0.4 10.8 0.1 1 21 475 495 475 496 0.94 7 22 0.0026 0.12 12.4 0.5 2 23 506 527 505 527 0.94 8 22 2.2 1e+02 3.2 0.3 1 23 543 566 543 566 0.90 9 22 0.0014 0.064 13.3 1.7 1 23 575 598 575 598 0.97 10 22 9 4.1e+02 1.3 3.2 1 22 610 631 610 633 0.89 11 22 4 1.8e+02 2.4 0.4 8 23 649 665 646 665 0.89 12 22 0.047 2.1 8.5 0.8 2 23 676 698 675 698 0.92 13 22 0.36 16 5.7 2.9 1 23 703 726 703 726 0.96 14 22 6.7e-05 0.003 17.4 2.9 1 23 732 754 732 754 0.97 15 22 0.00099 0.045 13.7 1.1 2 23 762 783 761 783 0.96 16 22 7.8e-05 0.0035 17.2 2.3 1 23 788 810 788 810 0.96 17 22 0.00013 0.0057 16.6 1.2 1 23 816 838 816 838 0.98 18 22 6.1e-06 0.00028 20.7 1.5 1 23 844 866 844 866 0.98 19 22 0.0021 0.096 12.7 3.5 2 23 873 894 873 894 0.98 20 22 0.00026 0.012 15.6 0.5 2 23 902 924 901 924 0.97 21 22 5.4e-05 0.0024 17.7 0.2 1 23 929 951 929 951 0.98 22 22 0.00032 0.015 15.3 3.9 1 23 957 980 957 980 0.97
Sequence Information
- Coding Sequence
- ATGAGTTCCGATTCTGAAGACGAACCACTTTCGGTACTAGCAGCAAAAAGGAGAGCTCACCCTGAGACCAAAGAATTGATACTGCCGGAAGCGATTGTCATAGAAAcgagaaagagaaagaagaaaaaatatgtcAACACTAAAGGCCTAAGTATTAGCATTCAGCCAGCAAAACCGATTATCATTGAGAGACCTGTAGATGTTTGGCTGTATTTAAAAGATCTCAGTCCGGCAGGCCCTTATAGCTGCTTATTATGTTCCTTTTGGTTCACAAATCGCTCCAGACTTGTTGTTCATTACATTTTGAACCATAAAAAGGATTTCTGTGGAATATGCAGATATTTTGTCCCGAACCGAGAATCATGGACTTCTCACCTGCAGTTTCATACTCCATGGCCATGTTCACAATGTATACAAAACTTTGCAACTGAAAAATTACTAAGGGATCACATGAGCACTGCACATAATTTGGTGCACTGCCGATTATGCCATTTCCGTGTTGCTGATGATGACCTTTATAATTCACATTTATTTCAAAAgcataatattacaaatacatcAACAAAATCGAGCGACATTCTCTGGGATATTCAGTACAAAGGTGCTCCAAAGTTTGCTTGTCGTTTATGCTCCAAACCCAACGTGTTAAGTCGTACCTTCTTTAATCATTATATGGGGTACCACCATTTCACGCTTAAATGCTTCACTCAAATCATATCTGGTACTGATCCCCCATTTGATGTAAACGGCGCGGACTTAAGTAGCGAGTTTGTGAGTAATGAGTTGAGTACTAAAACTGCAGTAGGCTATGTAGATCTTGATAAAGAAACTCATTTAAAAATAGCGATACAAGAGAAGCCCCAGATTTCAATGGATGTGAAAGATGAAGTGGTGAGCGATGAAGATACTAAATCAGAGGAAGTGAATGCAAAATGTGAAAAGGAAGAGAGTATAGTAAAGAATTACAAAGGAGATGAAGACTTTGATGTGACTCTTATGGAGATGATAGTTTTGCAAAAATGCTACTTAAACCACATAGATGAACTTTTAAATGACAAAAATGGTGTTACGAAGAATTCGTATATTGCTTATGACAAGGCATTGGACGAAATGGAAAACTTTGAATGTGCAATATGTAAATCAATAATGACTGATGTCCTAGATTATTATCACCACCTTACCAAAATGCATATAACTAAATGCACACCATACTATATGTGTAGGGTTTGTTCTAACACATTTGAAACGTTATCTGATTTGGAAAGTCACGTAATGCAGGAAATTGGTGAATTTGATGACCTGTGGATATGTCAATTCTGCGACAAAGAATTCGAAAATCGTGTGANTAAATCAATAATGACTGATGTCCTAGATTATTATCACCACCTTACCAAAATGCATATAACTAAATGCACACCATACTATATGTGTAGGGTTTGTTCTAACACATTTGAAACGTTATCTGATTTGGAAAGTCACGTAATGCAGGAAATTGGTGAATTTGATGACCTGTGGATATGTCAATTCTGCGACAAAGAATTCGAAAATCGTGTGAACACTAGGCGGCATCTAGAAGATCATTTGCAAGAGATGGAATATGATAATTGTTTCAGTCCTCATTTGGGTTTTAAATGCAGATATTGTCCAATATTGTTCTGGAATGAGGGAGACAGAGAAACTCACCAGATTAAAGTGCATTTCAGTATGCACAGAGAcgattattataaatgtgaaagctGTGATAAGCTTTTCAGTGATCAGGTTTGGTTCTTACATCATTACTTGTCGGAACACCAAGAAAGCAACAGTAAAACACCAACATTCCTTTATAAATGctgtttgtgtttattttgcTTCCCGAGCATTGATGCTGTCCGCAGTCACTTCAGTGCTGAACATCCGGAAGCGAGGAAGGTCTTCTGTTCGCTACCCCCTTGTAAATATAAACCACTGAGCCAAAGGAAGTCTTTTAAAATTCACTTGAAgACCCTGCACTCTCCGAAGTCCCGCGGCGGGGGCTTAGTGGAATGTCCCGTCTGCAGTCGAGATTTCAAAAGTCAGAAAGCTTGCAACGCCCACATCACGCAAATGCATGGCATCGGCCGATACAAGTGTAAGCTGTGCAAGGAATCCCTTCATTCTTCGGATGAAAGGAAACTCCACTATCTGATCCGTCACCCGGGGCAGCACCCGTACACGTGCACGCAGTGCGGCAAGTCGTTCCAGTACAAGTCATCATTGTACATGCACAAGCAGGAGCACATGCCCAACAGACAGAACTTAACGTGCAATTATTGTAACAAGGTGTTCTTGAAGAAGGACTCGTTCCGCGAGCACCTACTGATCCACGAGGGTCCGCAGCACGCCTGCTCCTACTGCCCGATGCGGTTCGTGCAGCGCTCCAACATGCTGCGCCACGAGCGGAGACACACCGGCGAGCGGCCCTACGCCTGTCCGCACTGCGATCGGACCTTCGCGGACAAGGGAGCCTGCAACGCGCACGTCAGGTCGCATTCCAGAGAGACTATGTACGCTTGTATGTACTGTGGTCAGACTTTTGTACAGAAATCAAAACTAACGTACCACGTGAGGAAACACACGGGGGAAAATCTAGAGACGTGTTCCGTGTGTTCGAAGTTGTTCACAAGCGTTTGCTCCCTACGCGAACACATGAAGACGCACGAAGAAAAGACATTCAACGTTAAATGTCCTTTATGTGACAAGAAATACCAAGACGAGCGTTACATGCTGCGTCACCTGCGAACGGCGCACACGCGGGCGCGCTTCCCGTGTCCGCTGTGCGGGAAGTGCCTCAGCAGCTCCGTCGGGCTGAGGCTGCACGTCATCACGCACGCTGAACTCAGCATGTTCCATTGCAAGGTCTGCCCGAAAGGTTTCTCGGTGAAGAAGACGATGATGAAACATCTCCGTCGACGTCACGGCCTCAAAGGGACCGAATTGAACATTACGGATTATTATAACAAACTGGATCCCAGAGACTGCAAGCTCGGCCTCGACGAGGAGGTGATGACCAGCATCTTCGGTCCGCCGAAGAGGATCGTTAACGACGTCCTGGTCGGGGACTTTGTTACTGTGCACAACCAAAGGATCTCGAAGGCCGCGCGTCAGGCCGAGACTTCCAAGTCTGATGAAGATGATACCGAGGAAAACGAACCGACAGACAACGACGCGCCCGAACCGGAGGAGAGTGACCGCGAGAGCCAAGAGGAAGTGACCAAACAGCATTTCGTCAGCATCAAAATGGAGAAAATTGACAGCGACACGGAAAACACACAGAACACAGTCGAACTGGAGCCCACTGATTTTGTCAGCGTCAAAATCGAACCCCTAGATTCGATTGAGGATATCAACgattaa
- Protein Sequence
- MSSDSEDEPLSVLAAKRRAHPETKELILPEAIVIETRKRKKKKYVNTKGLSISIQPAKPIIIERPVDVWLYLKDLSPAGPYSCLLCSFWFTNRSRLVVHYILNHKKDFCGICRYFVPNRESWTSHLQFHTPWPCSQCIQNFATEKLLRDHMSTAHNLVHCRLCHFRVADDDLYNSHLFQKHNITNTSTKSSDILWDIQYKGAPKFACRLCSKPNVLSRTFFNHYMGYHHFTLKCFTQIISGTDPPFDVNGADLSSEFVSNELSTKTAVGYVDLDKETHLKIAIQEKPQISMDVKDEVVSDEDTKSEEVNAKCEKEESIVKNYKGDEDFDVTLMEMIVLQKCYLNHIDELLNDKNGVTKNSYIAYDKALDEMENFECAICKSIMTDVLDYYHHLTKMHITKCTPYYMCRVCSNTFETLSDLESHVMQEIGEFDDLWICQFCDKEFENRVXKSIMTDVLDYYHHLTKMHITKCTPYYMCRVCSNTFETLSDLESHVMQEIGEFDDLWICQFCDKEFENRVNTRRHLEDHLQEMEYDNCFSPHLGFKCRYCPILFWNEGDRETHQIKVHFSMHRDDYYKCESCDKLFSDQVWFLHHYLSEHQESNSKTPTFLYKCCLCLFCFPSIDAVRSHFSAEHPEARKVFCSLPPCKYKPLSQRKSFKIHLKTLHSPKSRGGGLVECPVCSRDFKSQKACNAHITQMHGIGRYKCKLCKESLHSSDERKLHYLIRHPGQHPYTCTQCGKSFQYKSSLYMHKQEHMPNRQNLTCNYCNKVFLKKDSFREHLLIHEGPQHACSYCPMRFVQRSNMLRHERRHTGERPYACPHCDRTFADKGACNAHVRSHSRETMYACMYCGQTFVQKSKLTYHVRKHTGENLETCSVCSKLFTSVCSLREHMKTHEEKTFNVKCPLCDKKYQDERYMLRHLRTAHTRARFPCPLCGKCLSSSVGLRLHVITHAELSMFHCKVCPKGFSVKKTMMKHLRRRHGLKGTELNITDYYNKLDPRDCKLGLDEEVMTSIFGPPKRIVNDVLVGDFVTVHNQRISKAARQAETSKSDEDDTEENEPTDNDAPEPEESDRESQEEVTKQHFVSIKMEKIDSDTENTQNTVELEPTDFVSVKIEPLDSIEDIND
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00236868;
- 90% Identity
- iTF_00236868;
- 80% Identity
- -