Bmor012277.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bombyx mori
Gene Symbol
-
Assembly
GCA_027497135.1
Location
CP114953.1:15565490-15581585[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 30 0.0036 0.2 12.2 0.8 1 23 202 224 202 224 0.98
2 30 0.0017 0.092 13.3 2.3 2 20 252 270 251 272 0.93
3 30 0.011 0.6 10.7 0.3 2 23 295 317 294 317 0.95
4 30 0.0048 0.27 11.8 0.2 1 23 367 390 367 390 0.96
5 30 0.01 0.58 10.8 0.1 2 23 404 425 404 425 0.97
6 30 0.0038 0.21 12.1 2.9 2 23 458 479 457 479 0.97
7 30 0.00091 0.05 14.1 5.8 1 23 521 544 521 544 0.98
8 30 0.00043 0.024 15.1 1.7 1 23 594 617 594 617 0.95
9 30 0.0018 0.099 13.2 0.7 1 23 685 707 685 707 0.97
10 30 0.0029 0.16 12.5 4.2 2 23 719 740 718 740 0.97
11 30 0.51 29 5.4 1.2 2 23 752 773 751 773 0.94
12 30 0.00039 0.022 15.2 1.3 1 23 783 805 783 805 0.98
13 30 0.00052 0.029 14.8 2.5 2 23 839 860 838 860 0.93
14 30 3.8e-05 0.0021 18.4 0.4 1 23 871 893 871 893 0.99
15 30 0.00046 0.025 15.0 2.2 1 23 901 923 901 923 0.99
16 30 0.057 3.2 8.4 0.6 2 23 943 964 942 964 0.95
17 30 0.029 1.6 9.4 2.0 1 23 982 1004 982 1004 0.94
18 30 0.078 4.3 8.0 4.6 1 23 1011 1033 1011 1033 0.98
19 30 0.015 0.83 10.3 3.1 2 23 1044 1066 1043 1066 0.95
20 30 0.0022 0.12 12.9 0.3 2 23 1089 1110 1088 1110 0.95
21 30 4.1 2.3e+02 2.6 0.2 2 20 1114 1132 1113 1133 0.91
22 30 7.4 4.1e+02 1.8 4.4 2 23 1153 1175 1152 1175 0.93
23 30 0.22 12 6.6 0.7 2 23 1191 1212 1190 1212 0.95
24 30 0.18 10 6.9 1.3 5 23 1222 1240 1219 1240 0.92
25 30 0.0015 0.083 13.4 1.0 2 23 1251 1273 1250 1273 0.97
26 30 1.5 82 4.0 6.2 2 23 1290 1308 1290 1308 0.88
27 30 0.4 23 5.8 1.2 2 20 1312 1330 1312 1332 0.87
28 30 0.47 26 5.5 2.2 2 23 1381 1402 1380 1402 0.94
29 30 0.0012 0.068 13.7 0.6 2 23 1413 1435 1412 1435 0.96
30 30 1.5 81 4.0 3.0 2 20 1473 1491 1473 1493 0.92

Sequence Information

Coding Sequence
ATGGCCCTCAAACTTGGGAAGTGTAGGCTTTGCCTCAAGCTGGGCGACTTTTACTCCATCTTCACAATGGACAATGCCGTTCAACTGGCCGAGATGGTTATGGAATGCGCGCGAATAAAGGTCTACGAAGGAGATGGCTTACCAGACAAGATATGCTCGGAATGCATTCAGAAACTTAGTAGCGCGTACATATTCAAACAGCAATGCGAGAGAGCGGATCAAGAGTTGAGACGGAACTATGTACCGCCACCAGGATTCAGTGTAAGTCCGGCGCCGACAAGTCGTCAAAGCAACGACTCCGCCATTTCCACCCAAACTGACAGTTCGAACGTAAAGAACTCCGCGTCCGATGGCAAACTAACAAACGTCCAGCGTTCTCGCAAACGCAGCATCGACAGTGACAACACATCGACTAGCAGCGTCCCGAAGTCCCAAACCGGGAACTCTAAACGCATCGAAGAACTACGCAGGACTAGCAAAAGAGCCAAAGTCCAACCTAAATACTTTCAAGTGGACTCGGACTGTGATGATGTCGCGTCTCCGATTTCATTCGCCGAAAGCGGCGGCACCGACACCGAGGAGTGTCCCGTCAAAAACAAAAGCTATAGCTGCTCCGTTTGCAATAAAGACTTCAAATCGGGCCTCAGCCTCAGCAATCACTCGCGGATACACAAAAACGATAGCGTCGGCGAGTACGTTCCTCATGATACCCCGAATAAACTAAGGAGTGACGTTAAAGAGGAAGAACCGCTCACGTGCCAAAAGTGTGGAAAGTCTTTCAAATTGAAGATCATGTTAAATCGACATAAATGCGAAACTTCTGGACACAAAGAATTACTCGTCTCGCTCAAGCCGATAGACGGAGGGCAATACATAAACATGAGCTGCGAATTCTGCTCGGCTAAATTTTACACCATCGAGAGTCTGGAGAACCACATGAAGCTCGCGCACGCGGCTTCGCCCAAGAATGTTCTGGAAAGGCCAGATAAGCCTGACAGAGTGCCCGTTCCGTGTCTGTTCTGTCGGGAGCTCTTCGACGATTACCCGTTGCACAACTCGCACTTTAACTCTTGCGAAAAGAAGATTCCCTTGCAGAGTTTCGATTGTCCTCTTTGCGACAAAAACACCCCGAACAGGACGGGCTATTTTCTGCATCTCAGGGTGGTGCACTTCAAGTACGTTCAGAGCGACGCCGTGACGTCGGCGCGCCAGTGTCGCATCTGCAACAAGAAGCTCGCCACGGAGGCCATGCTGATAGCGCACTTGGCGAGCCACGTGACCAACAATGATGCCGTCGATGCGGTAAACTCGAGTCCGAAAGAATCAACAGCGGATAAGCGAGCATCGCCGTCGACTCCGGGCGAGCCCTTGAAATGCAGCTATTGTGACAGGACCTTCCTGTATAAAAAGTCGTTGAGTAATCACGAGCGCAAGCACGAAGACGGCACCCTGACGGTCAAGCTAGAGGACAATGTGAACGACAGTCATAACGATTCGAGTCTACTGAGCGAGACCAACCGCGCGTCGGACACAGACTCCAGCCAAGACGAGACGTACGACTTCACCTGCGACGTGTGCGACAAACAGTTCTCGTACCGGAAACAATATATACACCACAAGAAAACTAAACACACAATGTGTGCGGGAGTTAAGAGATCGAAGATCACACTAAAAAACTGCACGGTCACTTGTCGGATATGTGATGTTGAAATGAAAGTTAGCGACGTGAAGGAGCACAATCAGAAGCATCTGTCGGAGAACATGAACCCTAGAAATATTTACAGTTGCAACGAGTGCGATGAGAAGTTTAAGAGCTGCAAAGGTCTCGCTGATCACATCAAGTTCGTGCACAGATTGAAGCAAACTCCTCCAGCGAAGATGTCCAATTCTATGAAGTTTGATGGTCCGGATCTAGCGGATTTTTGTGAGGTCGTTGTGACGAAAACGGAACCCCTGGATCGGATCCAGACTCACAACGGCTTCAAAGAGGTTCCGCTCATTGACCAGTACAGCGACGCCACACCGGGCCCGCCCGACGGCGACGCGACCTCATTCTCCTGCCACATTTGCGGGAAGAACATGCCCACGTTGATTTCACTCAAACGACATGTAAATTGGCACTTAAGAGTCGGCAACAACATCGAGAAGCAGGTCGAGTGCTTTGTCTGCCAACAGGTGTTCAGATTCCAGTGTCACTACAAAGCCCACATGCGCGAACACTACCGCGACCCCAACATAGACCCCAAACTATTGATCTGCTCCATCTGCAACCGCAAGAGTAAGCATCTCCGCGCCGCACAGATGCACATGATCTTCCACAAGCAGACGCGCTTCCAGAACAAAGACTACCAGTGCGCGATATGCAAAAAGGTCTTCCAGAACCGAAAGCTGTACCTTTACCACATGTCCGTGCATCAGAGAAAGGGAGAGAGCGGTCAGAATACCATAGTGGGCTTGCACAGCAGCGGGACCGGTCTACCTAATAAAGCAGAGAGCGGTGAGGATGGTTCCCTGACCTGCCAGATCTGCGGCAAGGTCTGCAACTCGGAGTCGTCCCTCAAGCACCACACCGTGTGGCACAACTCCAAGACCCTGCTGTACGGCGCCAGGTACGAGTGTCCCGTCTGCAAGGTGCAGTTCACCAACAAACGGTACCTCGCCATCCACGAGCGCACCCACTACGAGGACGACAACGGCCCCTACAAATGTAAGGTCTGCGGCAAAGGGTTCATAGACGAGGACTACCACCGCCGCCACCAGATGTCGCACAACTTCAGCCACTCCTCGCACAAGAAACGGATCGAAAATATGAGGAAGGGCAAAGTCAAATGTCCGTACTGCCCTCGGTACTTCGACGTCCTGAAACTGTTCCGACACTTGAAGAGCTCGCACCCGCAGAGTAAGATGATCAAATCGGAGGCCGAGCCGCCGCCGCAGCGCCAGTACTCGTGCAAGCTCTGCGCCAAACAGTTCCGCGACGAGAAGCGCCTGCAGCACCACGAGGAGGCGCACCTCCGGAAACCGGAGTTCTTTAAGTGCAAGTTCTGCGGGAAGAAAACTATATCATTGAAAAATCACAGGATCCACATAAAGTCTCACCTGACGAGCAAGTTCACCGACGCGCCTTTGAAGTGTTCGCGGTGCGAGGAGACGTTCGTGCGCGGGTACGACCTGCACCACCACCTGCGGGACTCGCACGGCGTCCACGAGACCTGGATCGCGGAGCGGACGGAGCCCGTGCTGGATGGGCCGCTGCACCACCTCCAGTGCTCCATCTGCTTCAAGATCCTCGCCTCCAAGGGCAACTTCGAGCGCCACATCGACTACCACAACTCGCTCCGGTGCAACTACTGCTTCGACTACTTCACGACGCCGAGGTTCCTCGAGGGTCACCTGGCCTTCAGCTGCGCCAAAAAGAAACTGATCGGCGACACAGAGGTGTACCCCAAGAAGTTGAAGTGCGATATCTGCTATAAAGCTTTCCATCTGCAAGTGAAGCTGGACTGCCACCGCCGCACGCAGCACGCCATCCGGGTCTCGAGGGAGGCTCGCGTCGGCAACAAGAAAACCGTCTGCGATTTCTGTTTCAAGGTCTTCGAAAGCGAAGATATCCTCAACTCGCACAAGAAATATCATCGAACCATCGGATATTACGGTTGCATTTATTGCAAGAAGAAGTTTGGCACGCCCACCTTGTACAGGAAGCACAAGACGTACCATTTGTCTCAAAAGAATGAAGAGAATCCGACCAAATGCGAGCACTGCGACGAGACTTTTGTAGCGTTCCGGGACATGATCCAGCACATGCGGTCGGCGCACGGAGACCACAAGGAGTGGATCGTGATGCCGAAGGACTCGGTCGAGGAGAAATGCCACATCTGCAATAAAACATTTTTCAATTTGCACAAACATTTGGCGTACCACGAAGAGAACAGATGCAAGAAGTGCGGTAAGTATTTCTTCTCGGAAGCCGATTTTGACGGTCACCTGTGCGCCATCGAGAGCGACGACGAAGCCGCGGCAGACGTCAACAACGCCGGCGCACCCGCGTACGAAGAGTGCCGCTTCTGCTTCAAGCCCATCACTAGGAAGAATACGAAGAGATTACACGACGGCATCCACAAGACGTCCGGCGCGATATCCTGTCGCTTCTGCACGTTCAAATTCAAAACGATGGACTCGTTCAGAGTGCACGCGTTCTCGCACCGCAGCCGGAAGTACAACGCGAAACCGATCAAGTGTCGCAAGTGCGGCGAGAAGTTCGTCAAATACGGGCCCTTCATTAAGCACATGAGGAACGTACATAAGTCCACGAAGAAGGTTCACTACAGAGCCACGGTACAACCGGAGGAGTGCGTGGTGTGCGGAGACCACTTCCCGAACCTCCACAATCACTACCGCGCTCATCTCCTCAACCGGTGTCAGCTCTGCAAGAAGTACTTTACGTCATTCAAACTGTTCTCGGCCCACGAATGCGACAAAGAAGATTCCGATCCCAGCAAAGTGTTCACGAGTGACGCTAATTTGGATTTCTTGATCAGAACGTACGTGCCCAAGGAAGAGAGGGACGACGAGAAGTACTACGGGTATACGGACAGCGAGGAGGAGAATGAGACGGAGGACCAAACTGCAAATCAGTCGCCGGTCATTTCCGACGTGCTCTCTCTCTTCCGGCCGAACGAAGCGAAGTATGACGAGGACAGTCAGACGGAGGAAGTGAAGAGTGAAAGTGTGGACAGTCCAGGAGAGGAGGTAAAAAGCCAAGAGGGGGGCGACCAGCTTGACGACAATGTAGTAAATCTTATTGATGATGAACTAATAGAGATCGAGGACCAAGTTCCTATAATTGTATTAGACGATGATTAG
Protein Sequence
MALKLGKCRLCLKLGDFYSIFTMDNAVQLAEMVMECARIKVYEGDGLPDKICSECIQKLSSAYIFKQQCERADQELRRNYVPPPGFSVSPAPTSRQSNDSAISTQTDSSNVKNSASDGKLTNVQRSRKRSIDSDNTSTSSVPKSQTGNSKRIEELRRTSKRAKVQPKYFQVDSDCDDVASPISFAESGGTDTEECPVKNKSYSCSVCNKDFKSGLSLSNHSRIHKNDSVGEYVPHDTPNKLRSDVKEEEPLTCQKCGKSFKLKIMLNRHKCETSGHKELLVSLKPIDGGQYINMSCEFCSAKFYTIESLENHMKLAHAASPKNVLERPDKPDRVPVPCLFCRELFDDYPLHNSHFNSCEKKIPLQSFDCPLCDKNTPNRTGYFLHLRVVHFKYVQSDAVTSARQCRICNKKLATEAMLIAHLASHVTNNDAVDAVNSSPKESTADKRASPSTPGEPLKCSYCDRTFLYKKSLSNHERKHEDGTLTVKLEDNVNDSHNDSSLLSETNRASDTDSSQDETYDFTCDVCDKQFSYRKQYIHHKKTKHTMCAGVKRSKITLKNCTVTCRICDVEMKVSDVKEHNQKHLSENMNPRNIYSCNECDEKFKSCKGLADHIKFVHRLKQTPPAKMSNSMKFDGPDLADFCEVVVTKTEPLDRIQTHNGFKEVPLIDQYSDATPGPPDGDATSFSCHICGKNMPTLISLKRHVNWHLRVGNNIEKQVECFVCQQVFRFQCHYKAHMREHYRDPNIDPKLLICSICNRKSKHLRAAQMHMIFHKQTRFQNKDYQCAICKKVFQNRKLYLYHMSVHQRKGESGQNTIVGLHSSGTGLPNKAESGEDGSLTCQICGKVCNSESSLKHHTVWHNSKTLLYGARYECPVCKVQFTNKRYLAIHERTHYEDDNGPYKCKVCGKGFIDEDYHRRHQMSHNFSHSSHKKRIENMRKGKVKCPYCPRYFDVLKLFRHLKSSHPQSKMIKSEAEPPPQRQYSCKLCAKQFRDEKRLQHHEEAHLRKPEFFKCKFCGKKTISLKNHRIHIKSHLTSKFTDAPLKCSRCEETFVRGYDLHHHLRDSHGVHETWIAERTEPVLDGPLHHLQCSICFKILASKGNFERHIDYHNSLRCNYCFDYFTTPRFLEGHLAFSCAKKKLIGDTEVYPKKLKCDICYKAFHLQVKLDCHRRTQHAIRVSREARVGNKKTVCDFCFKVFESEDILNSHKKYHRTIGYYGCIYCKKKFGTPTLYRKHKTYHLSQKNEENPTKCEHCDETFVAFRDMIQHMRSAHGDHKEWIVMPKDSVEEKCHICNKTFFNLHKHLAYHEENRCKKCGKYFFSEADFDGHLCAIESDDEAAADVNNAGAPAYEECRFCFKPITRKNTKRLHDGIHKTSGAISCRFCTFKFKTMDSFRVHAFSHRSRKYNAKPIKCRKCGEKFVKYGPFIKHMRNVHKSTKKVHYRATVQPEECVVCGDHFPNLHNHYRAHLLNRCQLCKKYFTSFKLFSAHECDKEDSDPSKVFTSDANLDFLIRTYVPKEERDDEKYYGYTDSEEENETEDQTANQSPVISDVLSLFRPNEAKYDEDSQTEEVKSESVDSPGEEVKSQEGGDQLDDNVVNLIDDELIEIEDQVPIIVLDDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00236061;
90% Identity
iTF_00236061;
80% Identity
-