Basic Information

Insect: Bombyx mandarina
Gene Symbol: -
Assembly: GCA_003987935.1
Location: NW:1990964-2009226[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 30 0.003 0.14 12.2 0.8 1 23 202 224 202 224 0.98

2 30 0.0014 0.064 13.3 2.3 2 20 252 270 251 272 0.93

3 30 0.0091 0.41 10.7 0.3 2 23 295 317 294 317 0.95

4 30 0.0041 0.19 11.8 0.2 1 23 367 390 367 390 0.96

5 30 0.0088 0.4 10.8 0.1 2 23 404 425 404 425 0.97

6 30 0.0032 0.15 12.1 2.9 2 23 458 479 457 479 0.97

7 30 0.00077 0.035 14.1 5.8 1 23 521 544 521 544 0.98

8 30 0.00036 0.016 15.1 1.7 1 23 594 617 594 617 0.95

9 30 0.0069 0.31 11.1 0.8 2 23 684 705 683 705 0.96

10 30 0.0024 0.11 12.5 4.2 2 23 717 738 716 738 0.97

11 30 0.43 20 5.4 1.2 2 23 750 771 749 771 0.94

12 30 0.00033 0.015 15.2 1.3 1 23 781 803 781 803 0.98

13 30 0.00045 0.02 14.8 2.5 2 23 837 858 836 858 0.93

14 30 3.2e-05 0.0015 18.4 0.4 1 23 869 891 869 891 0.99

15 30 0.00039 0.018 15.0 2.2 1 23 899 921 899 921 0.99

16 30 0.049 2.2 8.4 0.6 2 23 941 962 940 962 0.95

17 30 0.024 1.1 9.4 2.0 1 23 980 1002 980 1002 0.94

18 30 0.066 3 8.0 4.6 1 23 1009 1031 1009 1031 0.98

19 30 0.013 0.57 10.3 3.1 2 23 1042 1064 1041 1064 0.95

20 30 0.0018 0.083 12.9 0.3 2 23 1087 1108 1086 1108 0.95

21 30 3.5 1.6e+02 2.6 0.2 2 20 1112 1130 1111 1131 0.91

22 30 6.3 2.8e+02 1.8 4.4 2 23 1151 1173 1150 1173 0.93

23 30 0.19 8.5 6.6 0.7 2 23 1189 1210 1188 1210 0.95

24 30 0.15 6.9 6.9 1.3 5 23 1220 1238 1217 1238 0.92

25 30 0.0013 0.057 13.4 1.0 2 23 1249 1271 1248 1271 0.97

26 30 2.9 1.3e+02 2.8 5.4 2 23 1288 1306 1288 1306 0.88

27 30 0.34 16 5.8 1.2 2 20 1310 1328 1310 1330 0.87

28 30 0.4 18 5.5 2.2 2 23 1379 1400 1378 1400 0.94

29 30 0.001 0.047 13.7 0.6 2 23 1411 1433 1410 1433 0.96

30 30 1.2 56 4.0 3.0 2 20 1471 1489 1471 1491 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	30	0.003	0.14	12.2	0.8	1	23	202	224	202	224	0.98
2	30	0.0014	0.064	13.3	2.3	2	20	252	270	251	272	0.93
3	30	0.0091	0.41	10.7	0.3	2	23	295	317	294	317	0.95
4	30	0.0041	0.19	11.8	0.2	1	23	367	390	367	390	0.96
5	30	0.0088	0.4	10.8	0.1	2	23	404	425	404	425	0.97
6	30	0.0032	0.15	12.1	2.9	2	23	458	479	457	479	0.97
7	30	0.00077	0.035	14.1	5.8	1	23	521	544	521	544	0.98
8	30	0.00036	0.016	15.1	1.7	1	23	594	617	594	617	0.95
9	30	0.0069	0.31	11.1	0.8	2	23	684	705	683	705	0.96
10	30	0.0024	0.11	12.5	4.2	2	23	717	738	716	738	0.97
11	30	0.43	20	5.4	1.2	2	23	750	771	749	771	0.94
12	30	0.00033	0.015	15.2	1.3	1	23	781	803	781	803	0.98
13	30	0.00045	0.02	14.8	2.5	2	23	837	858	836	858	0.93
14	30	3.2e-05	0.0015	18.4	0.4	1	23	869	891	869	891	0.99
15	30	0.00039	0.018	15.0	2.2	1	23	899	921	899	921	0.99
16	30	0.049	2.2	8.4	0.6	2	23	941	962	940	962	0.95
17	30	0.024	1.1	9.4	2.0	1	23	980	1002	980	1002	0.94
18	30	0.066	3	8.0	4.6	1	23	1009	1031	1009	1031	0.98
19	30	0.013	0.57	10.3	3.1	2	23	1042	1064	1041	1064	0.95
20	30	0.0018	0.083	12.9	0.3	2	23	1087	1108	1086	1108	0.95
21	30	3.5	1.6e+02	2.6	0.2	2	20	1112	1130	1111	1131	0.91
22	30	6.3	2.8e+02	1.8	4.4	2	23	1151	1173	1150	1173	0.93
23	30	0.19	8.5	6.6	0.7	2	23	1189	1210	1188	1210	0.95
24	30	0.15	6.9	6.9	1.3	5	23	1220	1238	1217	1238	0.92
25	30	0.0013	0.057	13.4	1.0	2	23	1249	1271	1248	1271	0.97
26	30	2.9	1.3e+02	2.8	5.4	2	23	1288	1306	1288	1306	0.88
27	30	0.34	16	5.8	1.2	2	20	1310	1328	1310	1330	0.87
28	30	0.4	18	5.5	2.2	2	23	1379	1400	1378	1400	0.94
29	30	0.001	0.047	13.7	0.6	2	23	1411	1433	1410	1433	0.96
30	30	1.2	56	4.0	3.0	2	20	1471	1489	1471	1491	0.92

Sequence Information

Coding Sequence: ATGGCCCTCAAACTTGGGAAGTGTAGGCTTTGCCTCAAGCTGGGCGACTTTTACTCCATCTTCACAATGGACAATGCCGTTCAACTGGCCGAGATGGTTATGGAATGCGCGCGAATAAAGGTCTACGAAGGAGATGGCTTACCAGACAAGATATGCTCGGAATGCATTCAGAAACTTAGTAGCGCGTACATATTCAAACAGCAATGCGAGAGAGCTGATCAAGAGTTGAGACGGAACTATGTACCGCCACCAGGATTCAGTGTAAGTCCGGCGCCGACAAGTCGTCAAAGCAACGACTCCGCCATTTCCACCCAAACTGACAGTTCGAACGTAAAGAACTCCGCGTCCGATGGCAAACTAACAAACGTCCAGCGTTCTCGCAAGCGCAGCATCGACAGCGACAACACATCGACTAGCAGCGTTCCGAAGTCCCAAACCGGGAACTCTAAACGCATCGAAGAACTACGCAGGACTAGCAAAAGAGCCAAAGTCCAACCTAAATACTTTCAAGTGGACTCGGACTGTGACGATGTCGCGTCTCCGATTTCATTCGCCGAAAGCGGCGGCACCGACACGGAGGAGTGTCccgtcaaaaacaaaagctaTAGCTGCTCCGTTTGCAATAAAGACTTCAAATCGGGCCTCAGCCTCAGCAATCACTCGCGGATACACAAAAATGATAGCGTCAGCGAATACGCTTCTCTCGGTACCCCGAATAAACTAGGGAGTGACGTTAAAGAGGAAGAACCACTCACGTGCCAAAAGTGTGGAAAGTCTTTCAAACTGAAGATCATGTTAAATCGACATAAATGCGAAACTTCTGGACACAAAGAATTACTCGTCTCGCTCAAGCCGATAGACGGAGGGCAATACATAAACATGAGCTGCGAATTCTGCTCGGCTAaattttacactatcgagagtCTGGAGAACCACATGAAGCTCGCGCACGCGGCTTCGCCCAAGAATGTTCTGGAAAGGCCAGAGAAGCCTGACAGAGTGCCCGTTCCGTGTCTGTTCTGTCGGGAGCTCTTCGACGATTACCCGTTGCACAACTCGCACTTTAACTCTTGCGAAAAGAAGATTCCCTTGCAGAGTTTCGATTGTCCTCTTTGCGACAAAAACACCCCAAACAGGACGGGTTATTTTCTGCATCTCAGGGTGGTGCACTTTAAGTACGTTCAGAGCGACGCCGCGACGTCGGCGCGCCAGTGTCGCATCTGCAACAAGAAGCTCGCAACTGAGGCCATGCTGATAGCGCACTTGGCGAGCCACGTGACCAACAATGATGCCGTCGATGCGGTAAACTCGAGTCCAAAAGAATCAACAGCGGATAAGCGAGCATCGCCTTCGACTCCGGGCGAGCCCTTGAAATGCAGCTATTGTGACAGGACCTTCCTGTATAAAAAGTCGTTGAGTAATCACGAGCGCAAGCACGAAGACGGCACCCTGACGGTCAAGCTAGAGGACAATGTGAACGACAGTCATAACGATTCGAGTCTACTGAGCGAGACCAACCGCGCGTCGGACACAGACTCCAGCCAAGACGAGACGTACGACTTCACCTGCGACGTGTGCGACAAACAGTTCTCGTACCGAAAACAATATATACACCACAAGAAAACTAAACACACAATGTGTGCGGGAGTTAAGAGATCGAAGATCACACTAAAAAACTGCACGGTCACTTGTAGGATATGTGATGTTGAAATGAAAGTTAGCGACGTGAAGGAACACAATCAGAAGCATCTGTCGGAGAACATGAACCCTAGAAATATTTACAGTTGCAATGAGTGCGATGAGAAGTTTAAGAGCTGCAAAGGTCTCGCTGATCACATCAAATTCGTGCACAGATTGAAGCAAACTCCTCCAGCGAAGCTGTCCAATTCTATGAAGTTCGATGGTCCGGATCTAGCGGATTTTTGTGAGGTCGTTGTGACGAAAACGGAACCCCTGGATCGGATCCAGACTCACAACGGCTTCAAAGAGGTTCCGCTCATTGACCAGTACAGCGACGCCACACCGGGCCCGCCCGACGGCGACGCGACCTCCTGCCACATTTGCGGGAAGAACATGCCCACGTTGATTTCACTCAAACGACATGTAAATTGGCATTTAAGAGTCGGCAACAACATCGAGAAGCAGGTCGAGTGCTTTGTCTGCCAACAGGTGTTCAGATTCCAGTGTCACTACAAAGCCCACATGCGCGAACACTACCGCGACCCCAACATAGACCCCAAACTATTGATCTGCTCCATCTGCAACCGCAAGAGTAAGCATCTCCGCGCCGCACAGATGCACATGATCTTCCACAAGCAGACGCGCTTCCAGAACAAAGACTACCAGTGCGCGATATGCAAAAAGGTCTTCCAGAACCGAAAGCTGTACCTTTACCACATGTCCGTGCACCAGAGAAAGGGAGAGAGCGGTCAGAATACCATAGTGGGCTTGCACAGCAGCGGGACTGGTCTACCTAATAAAGCAGAGAGCGGTGAGGATGGTTCCCTGACCTGCCAGATCTGCGGCAAGGTCTGCAACTCGGAGTCGTCCCTCAAGCACCATACCGTGTGGCACAACTCCAAGACCCTGCTGTACGGCGCCAGGTACGAGTGTCCCGTCTGCAAGGTGCAGTTCACCAACAAACGGTACCTCGCCATCCACGAGCGCACCCACTACGAGGACGACAACGGCCCCTACAAATGTAAGGTCTGCGGCAAAGGGTTCATAGACGAGGACTACCACCGCCGCCACCAGATGTCGCACAACTTCAGCCACTCCTCGCACAAGAAACGGATCGAAAATATGAGGAAGGGCAAAGTCAAATGTCCGTACTGCCCTCGGTACTTCGACGTCCTGAAACTGTTCCGACACTTGAAGAGCTCGCACCCGCAGAGTAAGATGATCAAATCGGAGGCCGAGCCGCCGCCGCAGCGACAGTACTCGTGCAAGCTCTGCGCCAAACAGTTCCGCGACGAGAAGCGCCTGCAGCACCACGAGGAGGCGCACCTCCGGAAACCGGAGTTCTTTAAGTGCAAGTTCTGCGGGAAGAAAACTATATCATTGAAAAATCACAGGATCCACATAAAGTCTCACCTGACGAGCAAGTTCACCGACGCGCCTTTGAAGTGTTCGCGGTGCGAGGAGACGTTCGTGCGCGGGTACGACCTGCACCACCACCTGCGGGACTCGCACGGCGTCCACGAGACCTGGATCGCCGAGCGGACGGAGCCCGCGCTGGACGGGCCGCTGCACCACCTCCAGTGCTCCATCTGCTTCAAGATCCTCGCCTCCAAGGGCAACTTCGAGCGCCACATCGACTACCACAACTCGCTCCGGTGCAACTACTGCTTCGACTACTTCACGACGCCGAGGTTCCTCGAGGGTCACCTGGCCTTCAGCTGCGCCAAAAAGAAACTGATCGGCGACACAGAGGTGTACCCCAAGAAGTTGAAGTGCGATATCTGCTATAAAGCTTTCCATCTGCAAGTGAAGCTGGACTGCCACCGCCGCACGCAGCACGCCATCCGGGTCTCGAGGGAGGCTCGCGTCGGCAACAAGAAAACCGTCTGCGATTTCTGTTTCAAGGTCTTCGAAAGCGAAGATATCCTCAACTCGCACAAGAAGTATCATCGAACCATCGGATATTACGGTTGCATTTATTGCAAGAAGAAGTTTGGCACGCCCACCTTGTACAGGAAGCACAAGACGTACCATTTGTCTCAAAAGAATGAAGAGAATCCGACCAAATGCGAGCACTGCGACGAGACTTTTGTAGCGTTCCGGGACATGATCCAGCACATGCGGTCGGCGCACGGAGACCACAAGGAGTGGATCGTGATGCCGAAGGACTCGGTCGAGGAGAAATGCCACAtctgcaataaaatatttttcaatttgcaCAAACATTTGGCGTACCACGAAGAGAACAGATGCAAGAAGTGCGGTAAGTATTTCTTCTCGGAAGCCGATTTTGACGGTCACCTGTGCGCGATCGAGAGCGACGACGAAGCCGCGGCAGACGTCAACAACGCCGGCGCACCCGCGTACGAAGAGTGCCGCTTCTGCTTCAAGCCCATCACTAGGAAGAATACGAAGAGATTACACGACGGCATCCACAAGACGTCCGGCGCGATATCCTGTCGCTTCTGCACGTTCAAATTCAAAACGATGGACTCGTTTAGAGTGCACGCGTTCTCGCACCGCAGCCGGAAGTACAACGCGAAACCGATCAAGTGTCGCAAGTGCGGCGAGAAGTTCGTCAAATACGGGCCCTTCATTAAACACATGAGGAACGTACATAAGTCCACGAAGAAGGTTCACTACAGAGCCACGGTACAACCGGAGGAGTGCGTGGTGTGCGGAGACCACTTCCCGAACCTCCACAATCACTACCGCGCTCATCTCCTCAACCGGTGTCAGCTCTGCAAGAAGTACTTTACGTCATTCAAACTGTTCTCGGCCCACGAATGCGACAAAGAAGATTCCGATCCCAGCAAAGTGTTCACGAGTGACGCTAATTTGGATTTCTTGATCAGAACGTACGTGCCCAAGGAAGAGAGGGACGACGAGAAGTACTACGGGTATACGGACAGCGAGGAGGAGAATGAGACGGAGGACCAAACTGCAAATCAGTCGCCGGTCATTTCCGACGTGCTCTCTCTCTTCCGGCCGAACGAAGCGAAGTATGACGAGGACAGTCAGACGGAGGAAGTGAAGAGTGAAAGTGTGGACAGTCCAGGAGAGGAGGTAAAAAGCCAAGAGGGGGGCGACCAGCTTGACGACAATGTAGTAAATCTTATTGATGATGAACTAATAGAGATCGAGGACCAAGTTCCTATAATTGTATTAGACGATGATTAG
Protein Sequence: MALKLGKCRLCLKLGDFYSIFTMDNAVQLAEMVMECARIKVYEGDGLPDKICSECIQKLSSAYIFKQQCERADQELRRNYVPPPGFSVSPAPTSRQSNDSAISTQTDSSNVKNSASDGKLTNVQRSRKRSIDSDNTSTSSVPKSQTGNSKRIEELRRTSKRAKVQPKYFQVDSDCDDVASPISFAESGGTDTEECPVKNKSYSCSVCNKDFKSGLSLSNHSRIHKNDSVSEYASLGTPNKLGSDVKEEEPLTCQKCGKSFKLKIMLNRHKCETSGHKELLVSLKPIDGGQYINMSCEFCSAKFYTIESLENHMKLAHAASPKNVLERPEKPDRVPVPCLFCRELFDDYPLHNSHFNSCEKKIPLQSFDCPLCDKNTPNRTGYFLHLRVVHFKYVQSDAATSARQCRICNKKLATEAMLIAHLASHVTNNDAVDAVNSSPKESTADKRASPSTPGEPLKCSYCDRTFLYKKSLSNHERKHEDGTLTVKLEDNVNDSHNDSSLLSETNRASDTDSSQDETYDFTCDVCDKQFSYRKQYIHHKKTKHTMCAGVKRSKITLKNCTVTCRICDVEMKVSDVKEHNQKHLSENMNPRNIYSCNECDEKFKSCKGLADHIKFVHRLKQTPPAKLSNSMKFDGPDLADFCEVVVTKTEPLDRIQTHNGFKEVPLIDQYSDATPGPPDGDATSCHICGKNMPTLISLKRHVNWHLRVGNNIEKQVECFVCQQVFRFQCHYKAHMREHYRDPNIDPKLLICSICNRKSKHLRAAQMHMIFHKQTRFQNKDYQCAICKKVFQNRKLYLYHMSVHQRKGESGQNTIVGLHSSGTGLPNKAESGEDGSLTCQICGKVCNSESSLKHHTVWHNSKTLLYGARYECPVCKVQFTNKRYLAIHERTHYEDDNGPYKCKVCGKGFIDEDYHRRHQMSHNFSHSSHKKRIENMRKGKVKCPYCPRYFDVLKLFRHLKSSHPQSKMIKSEAEPPPQRQYSCKLCAKQFRDEKRLQHHEEAHLRKPEFFKCKFCGKKTISLKNHRIHIKSHLTSKFTDAPLKCSRCEETFVRGYDLHHHLRDSHGVHETWIAERTEPALDGPLHHLQCSICFKILASKGNFERHIDYHNSLRCNYCFDYFTTPRFLEGHLAFSCAKKKLIGDTEVYPKKLKCDICYKAFHLQVKLDCHRRTQHAIRVSREARVGNKKTVCDFCFKVFESEDILNSHKKYHRTIGYYGCIYCKKKFGTPTLYRKHKTYHLSQKNEENPTKCEHCDETFVAFRDMIQHMRSAHGDHKEWIVMPKDSVEEKCHICNKIFFNLHKHLAYHEENRCKKCGKYFFSEADFDGHLCAIESDDEAAADVNNAGAPAYEECRFCFKPITRKNTKRLHDGIHKTSGAISCRFCTFKFKTMDSFRVHAFSHRSRKYNAKPIKCRKCGEKFVKYGPFIKHMRNVHKSTKKVHYRATVQPEECVVCGDHFPNLHNHYRAHLLNRCQLCKKYFTSFKLFSAHECDKEDSDPSKVFTSDANLDFLIRTYVPKEERDDEKYYGYTDSEEENETEDQTANQSPVISDVLSLFRPNEAKYDEDSQTEEVKSESVDSPGEEVKSQEGGDQLDDNVVNLIDDELIEIEDQVPIIVLDDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00236836;
90% Identity: iTF_00236836;
80% Identity: -