Bmor003450.1
Basic Information
- Insect
- Bombyx mori
- Gene Symbol
- -
- Assembly
- GCA_027497135.1
- Location
- CP114962.1:693147-696379[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 4.5e-07 2.5e-05 24.5 1.1 1 23 29 52 29 52 0.95 2 20 0.12 6.6 7.4 3.9 2 23 58 80 57 80 0.89 3 20 5.1e-05 0.0028 18.0 0.2 2 23 89 111 89 111 0.97 4 20 0.00028 0.016 15.7 1.9 2 23 120 142 119 142 0.94 5 20 0.00011 0.0062 17.0 0.3 2 23 150 172 150 172 0.96 6 20 9.6e-06 0.00053 20.3 0.7 2 23 180 202 179 202 0.94 7 20 0.0059 0.33 11.5 4.0 1 23 208 231 208 231 0.96 8 20 4.9e-06 0.00027 21.2 0.2 1 23 238 261 238 261 0.98 9 20 0.0017 0.097 13.2 0.2 2 23 278 300 278 300 0.95 10 20 0.00056 0.031 14.8 1.4 1 23 325 348 325 348 0.97 11 20 0.31 17 6.1 0.7 2 22 356 376 355 376 0.93 12 20 0.029 1.6 9.4 0.5 3 23 386 407 385 407 0.95 13 20 0.02 1.1 9.9 8.0 1 23 427 450 427 450 0.97 14 20 4.4e-05 0.0024 18.2 1.4 2 23 457 479 456 479 0.96 15 20 0.00016 0.0089 16.5 2.5 2 23 486 508 485 508 0.94 16 20 0.096 5.4 7.7 3.6 1 23 514 537 514 537 0.95 17 20 0.22 12 6.6 4.8 2 23 545 567 545 567 0.95 18 20 0.0042 0.23 12.0 0.5 1 23 574 597 574 597 0.97 19 20 0.002 0.11 13.0 0.6 1 23 604 627 604 627 0.95 20 20 0.036 2 9.1 2.8 5 23 644 663 641 663 0.90
Sequence Information
- Coding Sequence
- atggactcccatcaaccatttaacaccaggagggccATTGACACAATGAACCAGAATCAAAACATGTCAATGAGCCTACTGGACTATGTCTGCGATTACTGCAACCGCATATTCACCAGGAAATACAACCTTCAAACGCACATAGAGAATCTGCACGTGAACTCCTCCTGCCACTGCGAGGTGTGCGGCAAGAGGTTCGGCACCACCACCGGCTTCCACCTCCATCTGTCAGCCGGGCACAATCGTTACGGTCAACCGCTGCCCGAATGCGACCTCTGCGGCCGGATCTTCACTAGGAAACAGAACATAGTCTCGCACATGATAACGGTGCACCTCCAAGGCTTAGGAAACGAGATCCGGTGCCGCTTCTGCAGCAAGACCTTCACGACCGGACGTAATTTGAAGCGGCACGTGAACTTGCTACACAATCCGAACGTCGAGTACCCGACTTGCGACATCTGCAAGAAAGTGTTCAAAGGAAAACCGTACTTGGTGACTCACATCCAGAGCATGCACAAGTCCGAGAGGGAATCGATCAAGTGTAACATGTGCGATAAAGCTTATACAAACGAGCGCAACTTGAAGAGGCACGTCGATATGTTCCATGGCGTCAAGGGCGAACATCACTGCGGCTTGTGCCCTAAGGTTTATTTGTCGAATCAGAGTCTGAAACGGCATCTGCGCACCAGACACTTGACCGGCGAGGAGCAGTACCGATGCGAATACTGTAACACGGTCTTTAAAGGGAACGAGGAACTGGAAGCTCACGTCCGGTCGCTCCACGCTGGTGAAGTATCGGAAACGACAGACGAGGAAAGTAGAGTGGATCGCCGCTGCGAGGACTGCGACCAGACATTCCCCGCAGAGAAGCTGCTGAGGCAACACGTCAAAAACGTGCATACGTTCAGCGCGTTTTATAAATACTGCAAGGATTCGCTGACGAAGCGAGCGGCTGGCGTTCCTAAGGAGTTATACCACTGCGAGTCGTGCCGCGAAGGGTTCATTACGGTATACGAACTGAAAACCCACATGCGGATCACGCACGACATTGAATACTCATTGTCGACATGCAATGTTTGCTTCGAAAGGTTTTACAGCAAACTATCGATGGCCGAGCACAAGAGGCGTTGCTTGCCGCCGCCAGACGCGAAAGCCTGCTCCTACTGCGATAAGCTGTTCACGGACGTAACCTCGCTCGAGTTTCACACGCGTATATTCCACCCGCAAGCCCGGACCGCGGACCCGGACACGAGACCGGCAAACCGCGACGGTAACTCGTTCAAGTGCGTCCATTGCCACCGGATTTATTACAGCGAGCGCTCGCTGAAGCACCACATTAAGCTGAAGCACAGCACGGACGAGGCGATGGAGTGCAAGAGCTGCGGGAAGATATGCAGCAACAAGTACTATTTAGCGTCGCACATGAAGATCGTTCATAGCACTAACGATTGGTCCAAATGCGACTTCTGCGACAAACAGTTCAAATCGAAAAGGAACATACGGCGTCACATTGAATACACGCACATGGGCATGCAGAGGCACAAGTGTATAGAGTGCGAAACGTTATTTAAAGAGAAACGAAGCCTAAGGAAGCACGTCAGGTCTAAACACCCGAATTCCGCGCTGTTCCCTCAGTGCCACATATGCTATAAGCGTTTCGAATCGGCCAAATCCTGCAAGATCCATTTAAAGCTCCTCCACGCGTTCAATATGGACACGTTTCCGTGCCATCTGTGCTCCGTCTCGTTCGGCAGCGACGAAGCCTTGTCCATACACCTCAAAACGAAGCACCTCGTCGAAGATCAGATTTACAAATGCGAAGAATGCAATCTAGTGTTCAAAGGTCAGGACAAGTTCGACGCTCACAACGAAACGCGTCACGTTAATTCCGCGGAGAGCTCGAAGCAGAAGGTCCTGCCGCGCTGCATCCTCTGCATGAAGGATTTCAGCACGCGCAAAACCCTCAAGCGGCACATCAAGAAGTTCCACGAGGGTTTCGACGCGGACGACCTGGCCAGTTTCGGCTCGAAACGCCGCGTGTTCAGTGTTGACTGCGAGGACTGTCAGAGCAGCTTCAACGACGACTTCCACTACAGCGTGTACATGAAGTTAAGGCATCTACGGGAGTCCGTAGTCTTCGAGTGCGGGAGTTGCGGGAGCTCATACAATTCATTGGAATTCGCGATACAGAGGTATAAATCGGCGAATGCGGACGCCGCGAAAGGGAAGATGATCTTGAGCGATCTGTGCACGGCTGAGATGAGCGACGGGGACGCCGATAACCCTGGCTGCGGGTCTGCGTACGAGACCACCGACCCTGGAATCGCGAACGACGATGCGATGTTGGAATCTCAAGGactgtgcgcttag
- Protein Sequence
- MDSHQPFNTRRAIDTMNQNQNMSMSLLDYVCDYCNRIFTRKYNLQTHIENLHVNSSCHCEVCGKRFGTTTGFHLHLSAGHNRYGQPLPECDLCGRIFTRKQNIVSHMITVHLQGLGNEIRCRFCSKTFTTGRNLKRHVNLLHNPNVEYPTCDICKKVFKGKPYLVTHIQSMHKSERESIKCNMCDKAYTNERNLKRHVDMFHGVKGEHHCGLCPKVYLSNQSLKRHLRTRHLTGEEQYRCEYCNTVFKGNEELEAHVRSLHAGEVSETTDEESRVDRRCEDCDQTFPAEKLLRQHVKNVHTFSAFYKYCKDSLTKRAAGVPKELYHCESCREGFITVYELKTHMRITHDIEYSLSTCNVCFERFYSKLSMAEHKRRCLPPPDAKACSYCDKLFTDVTSLEFHTRIFHPQARTADPDTRPANRDGNSFKCVHCHRIYYSERSLKHHIKLKHSTDEAMECKSCGKICSNKYYLASHMKIVHSTNDWSKCDFCDKQFKSKRNIRRHIEYTHMGMQRHKCIECETLFKEKRSLRKHVRSKHPNSALFPQCHICYKRFESAKSCKIHLKLLHAFNMDTFPCHLCSVSFGSDEALSIHLKTKHLVEDQIYKCEECNLVFKGQDKFDAHNETRHVNSAESSKQKVLPRCILCMKDFSTRKTLKRHIKKFHEGFDADDLASFGSKRRVFSVDCEDCQSSFNDDFHYSVYMKLRHLRESVVFECGSCGSSYNSLEFAIQRYKSANADAAKGKMILSDLCTAEMSDGDADNPGCGSAYETTDPGIANDDAMLESQGLCA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00236038;
- 90% Identity
- iTF_00236038;
- 80% Identity
- -