Bman009769.1
Basic Information
- Insect
- Bombyx mandarina
- Gene Symbol
- -
- Assembly
- GCA_003987935.1
- Location
- NW:2255042-2259057[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 3.8e-07 1.7e-05 24.5 1.1 1 23 14 37 14 37 0.95 2 20 0.099 4.5 7.4 3.9 2 23 43 65 42 65 0.89 3 20 4.2e-05 0.0019 18.1 0.2 2 23 74 96 74 96 0.97 4 20 0.00023 0.011 15.7 1.9 2 23 105 127 104 127 0.94 5 20 9.3e-05 0.0042 17.0 0.3 2 23 135 157 135 157 0.96 6 20 7.9e-06 0.00036 20.3 0.7 2 23 165 187 164 187 0.94 7 20 0.0049 0.22 11.6 4.0 1 23 193 216 193 216 0.96 8 20 4.1e-06 0.00018 21.3 0.2 1 23 223 246 223 246 0.98 9 20 0.0014 0.066 13.2 0.2 2 23 263 285 263 285 0.95 10 20 0.00046 0.021 14.8 1.4 1 23 310 333 310 333 0.97 11 20 0.26 12 6.2 0.7 2 22 341 361 340 361 0.93 12 20 0.024 1.1 9.4 0.5 3 23 371 392 370 392 0.95 13 20 0.016 0.74 9.9 8.0 1 23 412 435 412 435 0.97 14 20 3.6e-05 0.0016 18.3 1.4 2 23 442 464 441 464 0.96 15 20 0.00013 0.006 16.5 2.5 2 23 471 493 470 493 0.94 16 20 0.08 3.6 7.7 3.6 1 23 499 522 499 522 0.95 17 20 0.18 8.2 6.6 4.8 2 23 530 552 530 552 0.95 18 20 0.0035 0.16 12.0 0.5 1 23 559 582 559 582 0.97 19 20 0.0017 0.076 13.0 0.6 1 23 589 612 589 612 0.95 20 20 0.03 1.3 9.1 2.8 5 23 629 648 626 648 0.90
Sequence Information
- Coding Sequence
- ATGAACCAGAATCAAAACATGTCAACGAGCCTACTGGACTATGTCTGCGATTACTGCAACCGCATATTCACCAGGAAATACAACCTTCAAACCCACATAGAGAATCTGCACGTGAACTCCTCCTGCCACTGCGAGGTGTGCGGCAAGAGGTTCGGCACCACCACCGGCTTCCACCTCCATCTGTCAGCCGGGCACAATCGTTACGGTCAACCGCTGCCCGAATGCGACCTCTGCGGCCGGATCTTCACTAGGAAACAGAACATAGTCTCGCACATGATAACGGTGCACCTCCAAGGCTTAGGAAACGAGATCCGGTGCCGCTTCTGCAGCAAGACCTTCACGACCGGACGTAATTTGAAACGGCACGTAAACTTGCTTCACAATCCGAACGTCGAGTACCCGACTTGCGATATCTGCAAGAAAGTGTTCAAAGGAAAACCGTACTTAGTGACTCACATCCAGAGCATGCACAAGTCCGAGAGAGAATCGATCAAATGTAACATGTGCGATAAAGCTTATACAAACGAGCGCAACTTGAAGAGGCACGTCGACATGTTCCATGGCGTCAAGGGCGAACATCACTGTGGCTTGTGCCCTAAGGTTTATTTGTCGAATCAGAGTCTGAAACGGCATCTGCGCACCAGACACTTGACCGGCGAGGAGCAGTACCGATGCGAATACTGTAACACGGTCTTTAAAGGGAACGAGGAACTGGAAGCTCACGTCCGGTCGCTCCACGCTGGTGAAGTATCGGAAACGACAGACGAGGAAAGCAGAGTGGATCGCCGCTGCGAGGACTGCGACCAGACATTCCCCGCAGAGAAGCTACTGAGGCAACACGTCAAAAACGTGCATACGTTCAGCGCGTTTTATAAATACTGCAAGGATTCGCTGACGAAACGAGCGGCCGGCGTCCCTAAGGACTTATACCACTGCGAGTCGTGCCGCGAAGGGTTCATTACGGTTTACGAATTGAAAACCCACATGCGGATCACGCACGACATTGAATACTCATTGTCGACATGCAATGTTTGCTTTGAAAGGTTTTACAGCAAACTATCGATGGCCGAGCATAAGAGGCGTTGCTTGCCGCCGCCAGACGCGAAAGCCTGCTCCTACTGCGATAAGCTGTTCACGGACGTAACCTCGCTCGAGTTTCACACGCGTATATTCCACCCGCAAGCCCGGACCGCGGACCCGGACACGAGACCGGCAAACCGCGACGGTAACTCGTTCAAGTGCGTCCACTGCCACCGGATTTATTACAGCGAGCGCTCGCTGAAGCACCACATTAAGCTGAAGCACAGCACGGACGAGGCGATGGAGTGCAAGAGCTGCGGGAAGATATGCAGCAACAAGTACTATTTAGCGTCGCACATGAagatcgttcacagcactaacGATTGGTCGAAATGCGACTTCTGCGACAAACAGTTCAAATCGAAAAGGAACATACGGCGTCACATTGAATACACGCACATGGGCATGCAGAGGCACAAGTGTATAGAGTGCGAAACGTTATTTAAAGAGAAACGAAGCCTAAGGAAGCACGTCAGGTCTAAACACCCAAATTCCGCGCTGTTCCCTCAGTGCCACATATGCTATAAGCGTTTCGAATCGGCCAAATCCTGCAAGATCCATTTAAAGCTCCTCCACGCGTTCAATATGGACACGTTTCCGTGCCATCTGTGCTCCGTCTCGTTCGGCAGCGACGAAGCCCTGTCCATACACCTCAAAACGAAGCACCTCGTCGAAGATCAGATTTACAAATGCGAAGAATGCAATCTAGTGTTCAAAGGTCAGGACAAGTTCGACGCTCACAACGAAACGCGTCACGTAAACTCCGCGGAGAGCTCGAAGCAGAAGGTCCTGCCGCGCTGCATCCTCTGCATGAAGGATTTCAGCACGCGCAAAACCCTCAAGCGGCACATCAAGAAGTTCCACGAGGGTTTCGACGCGGACGACCTGGCCAGTTTCGGGTCGAAACGCCGCGCGTTCAGCGTCGACTGCGAGGACTGTCAGAGCAGCTTCAACGACGACTTCCACTACAGCGTGTACATGAAGTTAAGGCATCTACGGGAGTCCGTAGTCTTCGAGTGCGGGAGTTGCGGGAGCTCATACAATTCATTGGAATTCGCGATACAGAGGTATAAAACGGCGAATGCGGACGCCGCGAAAGGGAAGATGATCCTAAGCGATCTGTGCACGGCTGAAATGAGCGACGGGGACGCCGACAACCCTGGCTGCGGGTCTGCATACGAGACCACCGACCCTGGAATCGCGAACGACGATGCGATGTTGGAATCTCAAGGACTGTGCGCTTAG
- Protein Sequence
- MNQNQNMSTSLLDYVCDYCNRIFTRKYNLQTHIENLHVNSSCHCEVCGKRFGTTTGFHLHLSAGHNRYGQPLPECDLCGRIFTRKQNIVSHMITVHLQGLGNEIRCRFCSKTFTTGRNLKRHVNLLHNPNVEYPTCDICKKVFKGKPYLVTHIQSMHKSERESIKCNMCDKAYTNERNLKRHVDMFHGVKGEHHCGLCPKVYLSNQSLKRHLRTRHLTGEEQYRCEYCNTVFKGNEELEAHVRSLHAGEVSETTDEESRVDRRCEDCDQTFPAEKLLRQHVKNVHTFSAFYKYCKDSLTKRAAGVPKDLYHCESCREGFITVYELKTHMRITHDIEYSLSTCNVCFERFYSKLSMAEHKRRCLPPPDAKACSYCDKLFTDVTSLEFHTRIFHPQARTADPDTRPANRDGNSFKCVHCHRIYYSERSLKHHIKLKHSTDEAMECKSCGKICSNKYYLASHMKIVHSTNDWSKCDFCDKQFKSKRNIRRHIEYTHMGMQRHKCIECETLFKEKRSLRKHVRSKHPNSALFPQCHICYKRFESAKSCKIHLKLLHAFNMDTFPCHLCSVSFGSDEALSIHLKTKHLVEDQIYKCEECNLVFKGQDKFDAHNETRHVNSAESSKQKVLPRCILCMKDFSTRKTLKRHIKKFHEGFDADDLASFGSKRRAFSVDCEDCQSSFNDDFHYSVYMKLRHLRESVVFECGSCGSSYNSLEFAIQRYKTANADAAKGKMILSDLCTAEMSDGDADNPGCGSAYETTDPGIANDDAMLESQGLCA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00236827;
- 90% Identity
- iTF_00236827;
- 80% Identity
- -