Bmor006016.1
Basic Information
- Insect
- Bombyx mori
- Gene Symbol
- -
- Assembly
- GCA_027497135.1
- Location
- CP114945.1:2150178-2157343[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1.5 85 3.9 1.4 1 22 54 75 54 78 0.89 2 19 3.2e-05 0.0018 18.6 3.4 1 23 97 119 97 119 0.94 3 19 1.3 70 4.2 1.7 5 23 127 146 124 146 0.93 4 19 1.5e-06 8.6e-05 22.8 0.9 1 23 210 232 210 232 0.97 5 19 1.4e-05 0.00078 19.8 0.4 3 23 240 260 238 260 0.97 6 19 0.47 26 5.6 1.5 2 22 267 287 267 288 0.71 7 19 2.3e-06 0.00013 22.2 0.7 1 23 294 316 294 316 0.98 8 19 7.6e-06 0.00042 20.6 0.3 1 23 322 344 322 344 0.98 9 19 1.9e-05 0.0011 19.4 0.8 1 23 350 372 350 372 0.97 10 19 7e-05 0.0039 17.6 4.5 1 23 378 401 378 401 0.98 11 19 0.035 2 9.1 3.3 1 20 407 426 407 427 0.95 12 19 0.062 3.4 8.3 0.3 1 23 462 485 462 485 0.94 13 19 0.0054 0.3 11.6 1.0 2 21 489 508 488 509 0.93 14 19 0.0015 0.083 13.4 3.2 1 23 512 534 512 534 0.99 15 19 0.00017 0.0094 16.4 2.2 1 23 543 566 543 566 0.97 16 19 0.00013 0.0074 16.7 1.7 1 23 573 596 573 596 0.95 17 19 0.0025 0.14 12.7 1.0 2 21 601 620 600 621 0.93 18 19 2.9e-05 0.0016 18.8 1.0 3 23 631 651 629 651 0.95 19 19 1.8e-06 9.9e-05 22.6 1.0 1 23 657 680 657 680 0.98
Sequence Information
- Coding Sequence
- ATGCAGGCAACATTGCTTCCAATGTTGCCTCTTCTTCAAGCTGGAGCAGAAACTAGACCAAGGTGGTCAAGACTGTCAGTAATGAGGAAGCAACGAAGAAGAAGAAATATATTTGGAGTTCTCCGCGAAGTTAAGGTAGTGTTAGATCGTGTAAAAATCTACAGTTGCGACCAATGTCCACTCGGATTCCTCGACCAGACTGATTGGTGTTTGCACCAAACAAAATTCTCGCATATCAAAGAAAAAGAAGAAAACTTGTCTAACAATAACAACAAGTACATTAAAGTCCATCAGTGTCCCGATTGTAATAAAAAATTCGTTCATGAGAGCACGTTGAAGGCGCACTCGTTCGTTCATGAACCTATCCCTTATGTCTGTCACTGCGGCGTTGCATACTACAAGAGTTGCGACCTGAAGGATCACAAGAAACTCGTACATTCCGACGAAATGTCAATTGAAAGTATTGAAGAAGCCATTGAACCTGTCAAAACGAAAACCTCCAAACCGAAAATGAAATCTGTGCAAATCAAGAAATTAAAAAATAAAAAAATTCGAGGAAGGAATTCAAAGCCGGGTAGTCAAAAGATAAAACATAATTTTGATAAAAAACTAAACGACAATCTAGTTTATTCATGTCCGATTTGTAATAAAACGTTTAAAAATAAAGGGAATGTTGTAAAACACAAAGTAACGCACTCCGAAGTGAAACCGTACGGGTGTGAACTGTGTGATGCACGATTCACGCAAAAAGGATCCTTAAATATACATATGAAAAGGCACGCCGGTATCAAAGATGAGAAATGTCAATATTGCGGCAAAGAATTTCTTGGACGCCACGCGAGAATCAATCACGAATATACACACACGAAAGTCAAACCTTATGAATGTAAACATTGCGGGAAGGCATTCGCCGATCGTTCGGCCACGATACGCCACGAGCGGATCCACACGCGCGATATGAAATACAAATGTGAATATTGCAGTAAGGGTTTCACGGACGCGAGCGGCGTCATAAGACATCGCCTTATGCACAAAGGAAAGAAGGATTTCGCCTGTCGAATTTGTGATAAAACATTTTACACCACAACGGATCTACGAATCCATCTTTTATCGCATACGGCAGTGAAAGATTACCAGTGCGATTATTGCAAGAATTATTTCACGAAAAAATGCAACCTCATTAATCACATCAGAACAATACATTATGGCCAAAAGTTGTATCGATGCACGGAATGTTTTAAAAACTTTTCGGGAACCACCAACATGATTAAGCACAAATGTCCGAATTCGGTGAATAAAAATCTCATAAAATGCGAACTGTGCGGTCTGCGAACCAGAGACATAAGTAAACACACAAAAAGCTTTCACACTAAAAACCACTTCTATCTTTGTGATAACTGTCCTAACCAATATACGTGGAAATGGGACTTAATACGCCACATGCTTAAGCAACATATAAAGATCAAATGCAAAAAATGCTTAAGCTATTTCTCAAGCAATTCCGATCTGAAGAGACATAATCGTATAGGATGTTTCAAATGCAAAAAGTGTGATAAAAATCTTGAAAGTGAGCAAACTTATAAGTCTCATATAAAAAAACATGCAAAAAAGGAGGAGTTTGCCAAATACTCGTGCACTAAATGTGATTGTGCTTTTTCGCTACCCGCATCGCTGACCAACCATTACCGGCTAAAACATCTCACCGACCCAGCTTATTACGAATGCGACCATTGCAAAAAAGTATTTAATACAAAATTACTTTTAGTTTCGCACGTTAAGGACAGTCACATGAACGCTTTGTACTGTGATGTGTGTAAAAAGAAGTTTTATTCGGAAACTGAATTCAGACAACACAAACGTATAGTCTGTCAATCTCCGGGGAATTGGTTTTGCGAGATTTGCGACAAAACGTTCACCAGAAGGAAGGGCTTGTCGTCTCATTTGTTGTTTCATTCGTCAACAGCTTCATACGAATGCGACTATTGCGGGAAGAAATTTAAACTAAAAAATCTTTTGGCGATCCACATCAGAAGGAAACATATAAAGGAAACCAGAAAAGTACCTAAGAAACAACCTAAAAGTCTGGTTTTCATTTTTTGA
- Protein Sequence
- MQATLLPMLPLLQAGAETRPRWSRLSVMRKQRRRRNIFGVLREVKVVLDRVKIYSCDQCPLGFLDQTDWCLHQTKFSHIKEKEENLSNNNNKYIKVHQCPDCNKKFVHESTLKAHSFVHEPIPYVCHCGVAYYKSCDLKDHKKLVHSDEMSIESIEEAIEPVKTKTSKPKMKSVQIKKLKNKKIRGRNSKPGSQKIKHNFDKKLNDNLVYSCPICNKTFKNKGNVVKHKVTHSEVKPYGCELCDARFTQKGSLNIHMKRHAGIKDEKCQYCGKEFLGRHARINHEYTHTKVKPYECKHCGKAFADRSATIRHERIHTRDMKYKCEYCSKGFTDASGVIRHRLMHKGKKDFACRICDKTFYTTTDLRIHLLSHTAVKDYQCDYCKNYFTKKCNLINHIRTIHYGQKLYRCTECFKNFSGTTNMIKHKCPNSVNKNLIKCELCGLRTRDISKHTKSFHTKNHFYLCDNCPNQYTWKWDLIRHMLKQHIKIKCKKCLSYFSSNSDLKRHNRIGCFKCKKCDKNLESEQTYKSHIKKHAKKEEFAKYSCTKCDCAFSLPASLTNHYRLKHLTDPAYYECDHCKKVFNTKLLLVSHVKDSHMNALYCDVCKKKFYSETEFRQHKRIVCQSPGNWFCEICDKTFTRRKGLSSHLLFHSSTASYECDYCGKKFKLKNLLAIHIRRKHIKETRKVPKKQPKSLVFIF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00236031;
- 90% Identity
- iTF_00236031;
- 80% Identity
- -