Basic Information

Insect: Bombyx mandarina
Gene Symbol: -
Assembly: GCA_003987935.1
Location: NW:1120770-1131249[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 1.2 56 4.0 1.4 1 22 18 39 18 42 0.89

2 20 2.6e-05 0.0012 18.7 3.4 1 23 61 83 61 83 0.94

3 20 1 46 4.3 1.7 5 23 91 110 88 110 0.93

4 20 1.2e-06 5.6e-05 22.9 0.9 1 23 174 196 174 196 0.97

5 20 1.1e-05 0.00051 19.9 0.4 3 23 204 224 202 224 0.97

6 20 0.37 17 5.6 1.5 2 22 231 251 231 252 0.71

7 20 1.8e-06 8.4e-05 22.3 0.7 1 23 258 280 258 280 0.98

8 20 6.1e-06 0.00028 20.7 0.3 1 23 286 308 286 308 0.98

9 20 1.5e-05 0.00069 19.5 0.8 1 23 314 336 314 336 0.97

10 20 5.6e-05 0.0026 17.7 4.5 1 23 342 365 342 365 0.98

11 20 0.028 1.3 9.2 3.3 1 20 371 390 371 391 0.95

12 20 9.3 4.2e+02 1.2 0.4 2 12 401 411 400 424 0.82

13 20 0.049 2.2 8.4 0.3 1 23 426 449 426 449 0.94

14 20 0.0043 0.2 11.7 1.0 2 21 453 472 452 473 0.93

15 20 0.0012 0.054 13.5 3.2 1 23 476 498 476 498 0.99

16 20 0.00013 0.0061 16.5 2.2 1 23 507 530 507 530 0.97

17 20 0.00011 0.0048 16.8 1.7 1 23 537 560 537 560 0.95

18 20 0.002 0.089 12.8 1.0 2 21 565 584 564 585 0.93

19 20 2.2e-05 0.001 18.9 0.9 3 23 595 615 593 615 0.95

20 20 1.4e-06 6.5e-05 22.7 1.0 1 23 621 644 621 644 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	1.2	56	4.0	1.4	1	22	18	39	18	42	0.89
2	20	2.6e-05	0.0012	18.7	3.4	1	23	61	83	61	83	0.94
3	20	1	46	4.3	1.7	5	23	91	110	88	110	0.93
4	20	1.2e-06	5.6e-05	22.9	0.9	1	23	174	196	174	196	0.97
5	20	1.1e-05	0.00051	19.9	0.4	3	23	204	224	202	224	0.97
6	20	0.37	17	5.6	1.5	2	22	231	251	231	252	0.71
7	20	1.8e-06	8.4e-05	22.3	0.7	1	23	258	280	258	280	0.98
8	20	6.1e-06	0.00028	20.7	0.3	1	23	286	308	286	308	0.98
9	20	1.5e-05	0.00069	19.5	0.8	1	23	314	336	314	336	0.97
10	20	5.6e-05	0.0026	17.7	4.5	1	23	342	365	342	365	0.98
11	20	0.028	1.3	9.2	3.3	1	20	371	390	371	391	0.95
12	20	9.3	4.2e+02	1.2	0.4	2	12	401	411	400	424	0.82
13	20	0.049	2.2	8.4	0.3	1	23	426	449	426	449	0.94
14	20	0.0043	0.2	11.7	1.0	2	21	453	472	452	473	0.93
15	20	0.0012	0.054	13.5	3.2	1	23	476	498	476	498	0.99
16	20	0.00013	0.0061	16.5	2.2	1	23	507	530	507	530	0.97
17	20	0.00011	0.0048	16.8	1.7	1	23	537	560	537	560	0.95
18	20	0.002	0.089	12.8	1.0	2	21	565	584	564	585	0.93
19	20	2.2e-05	0.001	18.9	0.9	3	23	595	615	593	615	0.95
20	20	1.4e-06	6.5e-05	22.7	1.0	1	23	621	644	621	644	0.98

Sequence Information

Coding Sequence: ATGGCACAATTACTCCGCGAAGTTAAGGTAGTGTTAGATCGTGTAAAAATCTACAGTTGCGACCAATGTCCACTCGGATTCCTCGACCAGACTGATTGGTGTTTGCaccaaacaaaattctcgcataTCAAAGAaaaagaAGAAAACTTGTCTAACAATAACAACAAGTACATTAAAGTCCATCAGTGTCccgattgtaataaaaaattcgtTCATGAGAGCACGTTGAAGGCGCACTCGTTCGTTCATGAACCTATCCCTTATGTCTGTCACTGCGGCGTTGCATACTACAAGAGTTGCGACCTGAAGGATCACAAGAAACTCGTACATTCCGACGAAATGTCAATTGAAAGTATTGAAGAAGCCATTGAACCTGTCAAAACGAAAACCTCCAAACCGAAAATGAAATCTGTGCAAatcaagaaattaaaaaataaaaaaattcgaggAAGGAATTCAAAGCCGGGTAGTCAAaagataaaacataattttgataaaaaactaAACGACAATCTAGTTTATTCATGTCCGATTTGtaataaaacgtttaaaaataaagGGAATGTTGTAAAACACAAAGTAACGCACTCCGAAGTGAAACCGTACGGGTGTGAACTGTGTGATGCACGATTCACGCAAAAAGGATCCTTAAATATACATATGAAAAGGCACGCCGGTATCAAAGATGAGAAATGTCAATATTGCGGCAAAGAATTTCTTGGACGCCACGCGAGAATCAATCACGAATATACACACACGAAAGTCAAACCTTATGAATGTAAACATTGCGGGAAGGCATTCGCCGATCGTTCGGCCACGATACGCCACGAGCGGATCCACACGCGCGATATGAAATACAAATGTGAATATTGCAGTAAGGGTTTCACGGACGCGAGCGGCGTCATAAGACATCGCCTTATGCACAAAGGAAAGAAGGATTTCGCCTGTCGAATTTGTGATAAAACATTTTACACCACAACGGATCTACGAATCCATCTTTTATCGCATACGGCAGTGAAAGATTACCAGTGCGATTATTGCAAGAATTATTTCACGAAAAAATGCAACCTCATTAATCACATCAGAACAATACATTATGGCCAAAAGTTGTATCGATGCACGGaatgttttaaaaacttttcgGGAACCACCAACATGATTAAGCACAAATGTCCGAATTCGGTGAATAAAAATCTCATAAAATGCGAACTGTGCGGTCTGCGAACCAGAGACATAAGTAAACACACAAAAAGCTTTCACACTAAAAACCACTTCTATCTTTGTGATAACTGTCCTAACCAATATACGTGGAAATGGGACTTAATACGCCACATGCTTAAGCAACATATAAAGATCAAATGCAAAAAATGCTTAAGCTATTTCTCAAGCAATTCCGATCTGAAGAGACATAATCGTATAGGATGTTTCAAATGCAAAAAATGTGATAAAAATCTTGAAAGTGAGCAAACTTATAAGtctcatataaaaaaacatgcaaaAAAGGAGGAGTTTGCCAAATACTCGTGCACTAAATGTGATTGTGCTTTTTCGCTACCCGCATCGCTGACCAACCATTACCGGCTAAAACATCTCACCGACCCAGCTTATTACGAATGCGATCATtgcaaaaaagtatttaatacaaaattacttttagtTTCGCACGTGAAGGACAGTCACATGAACGCTTTGTACTGTGATGTGTGTAAAAAGAAGTTTTATTCGGAAACTGAATTCAGGCAACACAAACGTATAGTCTGTCAATCTCCGGGGAATTGGTTTTGCGAGATTTGCGACAAAACGTTCTCCAGAAGGAAGGGCTTGTCGTCTCATTTGTTGTTTCATTCGTCAACAGCTTCATACGAATGCGACTATTGCGGGaagaaatttaaactaaaaaatcttTTGGCGATACACATCAGAAGGAAACATATAAAGGAAACCAGAAAAGTACCTAAGAAACAACCTAAAAGTCTGGTTTTCATTTTTTGA
Protein Sequence: MAQLLREVKVVLDRVKIYSCDQCPLGFLDQTDWCLHQTKFSHIKEKEENLSNNNNKYIKVHQCPDCNKKFVHESTLKAHSFVHEPIPYVCHCGVAYYKSCDLKDHKKLVHSDEMSIESIEEAIEPVKTKTSKPKMKSVQIKKLKNKKIRGRNSKPGSQKIKHNFDKKLNDNLVYSCPICNKTFKNKGNVVKHKVTHSEVKPYGCELCDARFTQKGSLNIHMKRHAGIKDEKCQYCGKEFLGRHARINHEYTHTKVKPYECKHCGKAFADRSATIRHERIHTRDMKYKCEYCSKGFTDASGVIRHRLMHKGKKDFACRICDKTFYTTTDLRIHLLSHTAVKDYQCDYCKNYFTKKCNLINHIRTIHYGQKLYRCTECFKNFSGTTNMIKHKCPNSVNKNLIKCELCGLRTRDISKHTKSFHTKNHFYLCDNCPNQYTWKWDLIRHMLKQHIKIKCKKCLSYFSSNSDLKRHNRIGCFKCKKCDKNLESEQTYKSHIKKHAKKEEFAKYSCTKCDCAFSLPASLTNHYRLKHLTDPAYYECDHCKKVFNTKLLLVSHVKDSHMNALYCDVCKKKFYSETEFRQHKRIVCQSPGNWFCEICDKTFSRRKGLSSHLLFHSSTASYECDYCGKKFKLKNLLAIHIRRKHIKETRKVPKKQPKSLVFIF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00236825;
90% Identity: iTF_00236825;
80% Identity: -