Bmor012281.4
Basic Information
- Insect
- Bombyx mori
- Gene Symbol
- PAXBP1
- Assembly
- GCA_027497135.1
- Location
- CP114953.1:15601261-15622052[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.08 3.6e+02 0.6 0.0 178 206 497 525 482 531 0.81 2 3 6.1e-12 2.8e-08 33.7 0.1 17 151 550 664 546 709 0.60 3 3 0.0027 12 5.4 0.1 26 72 786 833 782 847 0.74
Sequence Information
- Coding Sequence
- ATGTCATTATTTCGTAAACCGAGGAAGATCCAGCGACGCGTGTTCTGTGCCGATGATGATGAGGAAGATGGTGAGCCCGAAGCTCCACCTCCGCCGGTCATCAGCCAAGAGAAGGAGGTTAAAGAGAAGAAATCAGTTAAAACAACTGCCCTACTTAGTTTTGCAGATGAAGAAGAAGAAGAATGTGAAGTCTTCAAAGTGAAGAAGTCCTCGCAGAGTAAGAGAATTTCCAAAAGGAGAGACAAGGAGAAAAAACGTCCGTTTGATGGTGATAATAACAGATATGACAATAATGGGCATGAGGACACCAACGACAATGGTGTAATACCTATGGAGGTGGATGAACAGAAGCCTAAAAAGAAGAAAATAACACTAGAAGGACTGATACTATCGGGCAGAGAGGCTCTGGCTGCTGATGGAGCCGGAGATATCTCTGATGATGATGAGCCTGATGAAGGGGGCAAGTTCCCTCAGTACCGCCCTGAGTCGGTGAGGGCTGCACTGGCGGTCGCGGCCGGCGACATACCCGACGCCGCGCTCATCCACGCCGCTAGAAAGACGCGACAGCAGGCTCGCGAGCTAGGTGGTGATTACGTTCCGCTGAAGCCGGAAGCTGGCCCTGGGTCCAGACTGGTCAGAGACGATGACGGGTCCGGTGATGACGAGGAAGAAGGTAGGATAGCTGTCAGAGGCCTTGAACTGCCCAGCGATAGACCACAACGTGGGACAGCGGCCGCGACTCCTGAGGAAGAATTGAATAGTGACGTCGAAGAGTGGGAGGAGCAACAACTACAAAAAGCAAGACCTGTTATTGCCGACATCACAGGCGATAATACAGAAGTGAACCCATTCGCGGTGCCTCTTCCGGTGGCGAGCACGAAGACGCCCCTCCGCCCGCTGCTGGTGGACTCGGAGCGAGCCCCGGCCTCCGCGCAGGACCTGGTCGACGCGCTACGCAACCGGATGGAGGAGCTGCGGGGCGAGCGTGCGGAGGCGCAGTGCCGGCGGGCGGCGGGCGCGGGGCGGCTGGCGGGCGCGGTGCGGGCGCGGGACACGCGGGCCGCCCGCCGCGCCGCCCTGGACACGGCGTACCGGCGCGCGCAGGCCGCCCGGGGCTACCTCACCGACCTCATCGAGTGTCTCGACGAGAAGATGCCGAAGCTAGAAGCACTAGAAGCGAGAGCGCTGGCGATGCACAAGAGAAGATGCGATTTCCTGGTGGAGAGGAGACGCGCGGACGTCCGCGACCAGGCGCAGGACGTGCTGGCCATGGCCGCTCGTCCCGGATCAGTCAAACCTGTTGATTCCGAAGAGAAGATACGCAGAGCAGCAGAACGCGAGGGTAGGAGACGAGCTCGACGCCTCAAGAGAGAGGCCACTGCTGCCGCAGCAGGCGCTCACGTCAGGCACAGGGACGGCGACTCTAGCGATGATGAACTGCCTCCGCATGAGCTACACCACTATACGCAGGAGAGAGCCGCAATTCGCGCTGAGTCAGCACAGCTATTCTCGGACGCGCTGTCAGCGTGGCGCGGCGTGCGCGGCGTGTGCAGGCGGCTGGCGAGGTGGCGCGCCGCCCCGCGCTGTACTGTGACGCGTACGTCGCGGACTCCTGCCGCGACTACCGCGGGGGGCGCGCCCGACCCCGCGCTGTACTGTGACGCGTACGTCGCGGACTCCCTGCCGCGACTGTTGGCGCCCTACGTGCGACACGAGATGATATTATGGAATCCTCTGGCTGACGAAGATAACGAAGACTATGAGAGAATGGATTGGTACAAATGCTTGATGATGTATGGCGTTCGTAACGAGAAGACGTCAAGCGATTCTTCAGATTCTGATATGGAGCACGACGGTCACACTGTGGTCACGGAGAGCTCCGTGCGAGACGACATCGACCTCATGCTTGTACCCACTATTGTCGGGAGGGTGGTCATACCTAAACTCACAGAGCTGGTGGAGCAGGCGTGGGACCCGATGTGCGTGCGCGCGTGCGTGCGGCTGCGTGCGCTAGTGTACCGCGCCGCCGCCGTGCCCCGCGCCCGCCCCGCGCTGGCCCGCCTGGCCACGGCGCTGCACGCCGCGCTGCACTCTGCGCTCAACGCCGACGTGTTCCTGCCTGCGCTGCCGCCTGCGGTGCTCGAGGGAGGCGGCGGCGGGTTCTGGCGGCGCTGCGTGGGCGCGGGCGTGCGGCTGCTGCGCGGCGCGCTGGCGCTGGTGGCGCCGCCCGCACTGCTGCGGGCCGACGCGCTCGTGCTGCAACTCGTCGAGCGGCTGAGCTTCGCGGCGGGCGCGGCGGCGGGCCCGCAGGCGGCCTGGGCGGCCAGCGTGCTCGCGGGGGCGCTGCCGCGGGGGGAGCTGCGCCCCCACGCGCTCCGCCCCCTGCGCCGTCTGGCCACCACCGCGATGGCCGCCCTGCAACCAGACAACCCGCTTCACATGAAAGCGTTAGAACAAGTACGAGCGATCTTATCAGAAGCGGAAGAGACGGAAAATAAAATCGAAGACGCGCAGAAACAAACGAAGCACAACTCTCGAATGTGA
- Protein Sequence
- MSLFRKPRKIQRRVFCADDDEEDGEPEAPPPPVISQEKEVKEKKSVKTTALLSFADEEEEECEVFKVKKSSQSKRISKRRDKEKKRPFDGDNNRYDNNGHEDTNDNGVIPMEVDEQKPKKKKITLEGLILSGREALAADGAGDISDDDEPDEGGKFPQYRPESVRAALAVAAGDIPDAALIHAARKTRQQARELGGDYVPLKPEAGPGSRLVRDDDGSGDDEEEGRIAVRGLELPSDRPQRGTAAATPEEELNSDVEEWEEQQLQKARPVIADITGDNTEVNPFAVPLPVASTKTPLRPLLVDSERAPASAQDLVDALRNRMEELRGERAEAQCRRAAGAGRLAGAVRARDTRAARRAALDTAYRRAQAARGYLTDLIECLDEKMPKLEALEARALAMHKRRCDFLVERRRADVRDQAQDVLAMAARPGSVKPVDSEEKIRRAAEREGRRRARRLKREATAAAAGAHVRHRDGDSSDDELPPHELHHYTQERAAIRAESAQLFSDALSAWRGVRGVCRRLARWRAAPRCTVTRTSRTPAATTAGGAPDPALYCDAYVADSLPRLLAPYVRHEMILWNPLADEDNEDYERMDWYKCLMMYGVRNEKTSSDSSDSDMEHDGHTVVTESSVRDDIDLMLVPTIVGRVVIPKLTELVEQAWDPMCVRACVRLRALVYRAAAVPRARPALARLATALHAALHSALNADVFLPALPPAVLEGGGGGFWRRCVGAGVRLLRGALALVAPPALLRADALVLQLVERLSFAAGAAAGPQAAWAASVLAGALPRGELRPHALRPLRRLATTAMAALQPDNPLHMKALEQVRAILSEAEETENKIEDAQKQTKHNSRM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00235872;
- 90% Identity
- iTF_00235872;
- 80% Identity
- -