Bmor004312.1
Basic Information
- Insect
- Bombyx mori
- Gene Symbol
- -
- Assembly
- GCA_027497135.1
- Location
- CP114962.1:19745873-19754829[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 8.4e-13 8.4e-10 38.2 0.0 1 39 143 182 143 186 0.91 2 4 1.5e-12 1.5e-09 37.4 0.1 1 39 197 235 197 238 0.94 3 4 9.4e-13 9.5e-10 38.1 0.1 2 45 253 297 252 297 0.95 4 4 8.9e-20 8.9e-17 60.5 0.1 1 43 304 347 304 349 0.95
Sequence Information
- Coding Sequence
- ATGCCGAGCCACAATCTAGCTTTAGTGAAAAATGAATTACAATTGGCGCAAGAAGACGGTGACTCATTTTATTCCCAATGTTACGTACCCAGTCAAGCGAACAGTTTGGAGGAGCTGGTCCCACTGGCGCCGGCGGGTCCGGCCGCGACCCCGGTCTGCGTGAAGCAGGAGCGCGTGGACTCGCCGCCCGCGCTGCAGCTCGAAACCTTGGAGTCGGTCCCGCAGCGCACgAGTTGTACGCTGATAGAGCGGCATCTGTCCTCGCTCCACGGGGAAGCGCGCGAGCGACCCGAGGCCAGCGACTTCACGCCGCTGCTCGCCGTCAAGGACGAGCCGTTGTCGGAAGGCGagcaacaccagcagagcggcgagGACACCAGCGACTCTCAGGCCGAGCCGGCGACCCGGGGCAGTCCAAAAAGTTGGACCCCGACTGACATGGACAATGCCTTGGAGGCGCTCAGGAGCCACCACATGAGTTTGACTAAGGCCTCGGCGCTGTTCGGCATCCCGTCCACCACGCTGTGGCAGCGCGCGCACCGCCTCGGCATCGACACGCCCAAGAAGGAGGGCTCCTCGAAGTCTTGGAGCGAGACGGACCTCAAGAACGCGCTGGAAGCTCTCAGGGCCGGCTCTATATCCGCTAACAAGGCCAGCAAGGCTTACGGAATTCCGAGTAGCACTCTGTACAAGATAGCTCGTCGGGAGGGCATCCGTCTCGCGGCGCCCTTCAACGCGGCCCCCACGGCGTGGCGCCGCACCGACCTGCGCCACGCGCTCGGCGCGCTGCGAGCCCGCGCGCTCTCCGTGCAGCGCGCCGCCGCACTGTACGGCATACCCACCGGTACATTATACGGCCGGTGTAAGCGAGAAGGCATCGAGCTGTCTCGCTCTAACCCGACCCCGTGGTCCGAAGATGCAATGGCGGAAGCACTTGAGGCAGTGAGGGTTGGCCAGATGTCGATAAACCAGGCGGCTATACATTACAACTTGCCGTACTCGTCTCTGTATGGACGGTTCAAAAGATGCAAATACCAGAGCGTGCAACAGTACCAGCAGCCGCCGATTGCCCCGGACGGCCCCCCGCACGACCCGGGGCCCCCCCGGCCGGCCCCCCACCCCCCCGCCTACCCGCACTACCCGCACGCGCACGAGCAGGACTACGCGCAGACGCTGTGCTACCACCATCACTACAATACTGTCATTAGTTGA
- Protein Sequence
- MPSHNLALVKNELQLAQEDGDSFYSQCYVPSQANSLEELVPLAPAGPAATPVCVKQERVDSPPALQLETLESVPQRTSCTLIERHLSSLHGEARERPEASDFTPLLAVKDEPLSEGEQHQQSGEDTSDSQAEPATRGSPKSWTPTDMDNALEALRSHHMSLTKASALFGIPSTTLWQRAHRLGIDTPKKEGSSKSWSETDLKNALEALRAGSISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRTDLRHALGALRARALSVQRAAALYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMAEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQSVQQYQQPPIAPDGPPHDPGPPRPAPHPPAYPHYPHAHEQDYAQTLCYHHHYNTVIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00235792;
- 90% Identity
- iTF_00235792;
- 80% Identity
- -