Bman003270.1
Basic Information
- Insect
- Bombyx mandarina
- Gene Symbol
- -
- Assembly
- GCA_003987935.1
- Location
- NW:2911785-2920202[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6e-13 5.8e-10 38.2 0.0 1 39 143 182 143 186 0.91 2 4 1.1e-12 1e-09 37.4 0.1 1 39 197 235 197 238 0.94 3 4 6.8e-13 6.6e-10 38.1 0.1 2 45 253 297 252 297 0.95 4 4 6.4e-20 6.2e-17 60.5 0.1 1 43 304 347 304 349 0.95
Sequence Information
- Coding Sequence
- ATGCCGAGCCACAATCTAGCTTTAGTGAAAAATGAATTACAATTGGTGCAACAAGACGGTGACTCATTTTATTCCCAATGTTACGTACCCAGTCAAGCGAACAGTTTGGAGGAGCTGGTCCCACTGGCGCCGGCGGGTCCGGCCGCGACCCCGGTCTGCGTGAAGCAGGAGCGCGTGGACTCGCCGCCCGCGCTGCAGCTCGAAACCTTGGAGTCGGTCCCGCAGCGCACGAGCTGTACGCTGATAGAGCGGCATCTGTCCTCGCTCCACGGGGAAGCTCGCGAGCGACCCGAGGCCAGCGACTTCACGCCGTTGCTCGCCGTCAAGGACGAGCCTCTGTCGGAAGGCGaGCAACATCAGCAGAGCGGCGAGGACACTAGCGACTCTCAGGCCGAGCCGGCGACCCGGGGCAGTCCAAAAAGCTGGACCCCGACTGACATGGACAATGCCTTGGAGGCGCTCAGGAGCCACCACATGAGTTTGACTAAGGCCTCGGCGCTGTTCGGCATCCCGTCCACCACGCTGTGGCAGCGCGCGCACCGCCTCGGCATCGACACGCCCAAGAAGGAGGGCTCCTCGAAGTCGTGGAGCGAGACGGACCTCAAGAACGCGCTGGAAGCTCTCAGGGCCGGCTCTATATCCGCCAACAAGGCCAGCAAGGCTTACGGAATTCCGAGTAGCACTCTGTACAAGATAGCTCGTCGGGAGGGCATTCGGCTCGCGGCGCCCTTCAACGCGGCCCCCACGGCGTGGCGCCGCACCGACCTGCGCCACGCGCTCGGCGCGCTGCGAGCCCGCGCGCTCTCCGTGCAGCGCGCCGCCGCACTGTACGGCATACCCACCGGTACATTATACGGCCGGTGTAAGCGAGAAGGCATCGAGCTGTCTCGCTCTAACCCGACCCCGTGGTCCGAAGATGCAATGGCGGAAGCACTTGAGGCAGTTAGGGTTGGCCAGATGTCGATAAACCAGGCGGCCATACATTACAACTTGCCGTACTCGTCTCTGTATGGACGGTTCAAAAGATGCAAATACCAGAGCGTGCAACAGTACCAGCAGCCGCCGATTGTCCCGGACGGCCCCCCGCACGACCCGGAGCCCCCCCGGCCGGCCCCCCACCCCCCCGCCTACCCGCACTACCCGCACGCGCACGAGCAGGACTACGCGCAGACGCTGTGCTACCACCATCACTACAATACTGTCATTAGTTGA
- Protein Sequence
- MPSHNLALVKNELQLVQQDGDSFYSQCYVPSQANSLEELVPLAPAGPAATPVCVKQERVDSPPALQLETLESVPQRTSCTLIERHLSSLHGEARERPEASDFTPLLAVKDEPLSEGEQHQQSGEDTSDSQAEPATRGSPKSWTPTDMDNALEALRSHHMSLTKASALFGIPSTTLWQRAHRLGIDTPKKEGSSKSWSETDLKNALEALRAGSISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRTDLRHALGALRARALSVQRAAALYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMAEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQSVQQYQQPPIVPDGPPHDPEPPRPAPHPPAYPHYPHAHEQDYAQTLCYHHHYNTVIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00236562;
- 90% Identity
- iTF_00236562;
- 80% Identity
- -