Bmor000060.2
Basic Information
- Insect
- Bombyx mori
- Gene Symbol
- Rfx2
- Assembly
- GCA_027497135.1
- Location
- CP114964.1:2187961-2206257[-]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.4 2.4e+03 -0.8 0.0 6 38 15 47 11 54 0.84 2 3 3.4e-37 2.1e-33 114.8 0.0 3 78 256 331 254 332 0.97 3 3 1.2 7.2e+03 -2.3 0.0 25 38 671 684 667 690 0.78
Sequence Information
- Coding Sequence
- ATGGAAAGGAGGTATAGAGTTATCTTAACACGAGACGTATTTGAGGTTTTAGAAAATAATTGTTCTGAAGATAATACTGAAAGATTGGAAACTTCTGAAGTTCTACCAGATTTTGAGCATCACTGCAAGCAATTATATTACCATGATTTTGAGTGCGCCGGCGACGAGGTGCTCGTGGAATCGTCGCCGCCTCCATCGCCAGGCATGGCGGCGAGTCTAGCGGCGCCCACACAGGGCAACGGCGCCGGCAATACTTCGCCCTCGGCGGTACGCGAACTCATCGTTATACCGGAGATACCGAATTCTATACAACTACAGCATGCTATGCAACAGGTGTCGAACACTTTGGTGGAGGTGAAAGGGGATAGCTCGGGGCAGTCCAGTCCATCTGTGGACGCTCAACACACGTACATCACCGTTGCCAGGTCGTGGACTGGTCGGTATCCAGAAGCAACGGTAAAAGCCGAGGAGCACAGTGATGAAAGCGAGGGGGGCAATGGGACCAACTACCACGTACAGTACGTCACGGAGCCACAAGAGATATACACACAAGGGAATCAAACGCATATGGAGGAGCTACGTACGTACCCGGTGTACGGAGTCGCCACCGTCGCGAACCCGGCCCCGGCCGAGGGCACGTCGTTCGACAGCAACTGGGGCGGAGCCTCCTCGGCCGAATACTCCGCTTATGGCATCGTTGTGGCCGGCGACGAGGCGGAGGCTCCGTCGTCCCCCGCGACCCCCGGCGCCCCCCGCATGCCCCCCGCCACCGTGCAGTGGCTGCTGGACCACTACGAGACCGCGGACGGCGTATCCCTGCCCCGCTCGAGCCTGTACGCGCACTACCTGCGGCACTGTACGTCGCACCGCCTGGAGCCGGTCAACGCGGCGTCGTTCGGCAAGCTCATCCGCTCGGTGTTCGTGGGGCTGCGCACCAGGCGGCTCGGCACCCGCGGCAACTCCAAGTACCACTACTACGGCATCCGCGCCAAGCCGCACGCCGCCGCCGACACTAGCGCCGACACCGCCGCCGCCGACAAGACCGACCTCTACGACGCACAGGAAGGTAGGGCGCGTTCAAGCGAGCGCGAGACCGCGTCTAGTCCGGTGGGGATCAGCGGGGTGGCGCACCGGCAGTACCTGGGGACCGTGACTGCGCCCGACCCCCCCGAGCTGCTGCTGGACAAGCTGCCCGACGACGTGCCGCCCTCCGCCCTCCCCGCGCTGCGGAAACATCATAGAGAGCACGGGAGCTCGTTCCTGGAGGCGGTGGCGGCGCTGGACACGAGCGGCGTGGAGCGCACGCGCCGCTCGTTCTGGCGGGGCGCGGCGGGGGGGGACGCGGGCGCGCTGTGTCGCCGCACGCTGCTGGCGCTGGCGGCGCGCCGGGACGTGGCGCGGTGGCTGCGCAGCGCCGACCTGCTGCTGTACCAGCGCGCCGTCGACCTGCTGCTGCCCGACGTGCTGCGCCCCATCCCGCCGCAGCTCACGCAAGCCATCCGCAACTTTGCCAAGACTCTCGAGTCGGCTCTGGCGGGCGCCTCCAACGGAGCGCCGCCGGCCGCCAGTCGGGCGCAGGCCGCCGCCGCCGCCGCGCTGGCCGCTGCCCTGCGGCGCTACACCTCACTCAACCACTTAGCGCAGGCCGCCAGAGCCGTGCTCACCAATCATCATCAAATCCACCAGATGGTGCTGGACCTCAACCGTGTGGACTTCCGCGTGGTGCGCGAGCAGGCGGCGTGGGCCTGCGCCTGCGCGGCCGCACCGCACGCGCTGCGCCTCGAGACGGACTTCAAGGCCACGCTGTGCCGCGGCGCGTCGCTGGAGCAGTGGGCGGCGTGGCTGGAGGGCTGCGTGGGCGCGGCGCTGCTGCCGCACGAGGCGCGGCCGGGCTACACGCGCCGCGCCCGCCGGCTGCTGCTGCACTGGTCCTTCTACTCCTCGCTCGTCATCAGGGAGCTCACGCTCAGGTCGGCGGCGTCGTTCGGCTCGTTCCACCTGCTGCGGCTGCTGTACGACGAGTACGTGTCGTACCTGGTGGAGCGCCGCGTGGCCGCGCACCGCGCCGCGCCGCCCATCGCCGTCATGCAGCGCGCACTCGACGACGACGACGACGTGGCAGAGGACAACTCTCGCGGCGACGGCGACGACGACAACCCGGACTGGGAGTGGGACGACGAGGACGAGGAGGACGACGAGCCTCTCGACAACAAGAAGCACAAACTCAACGACTGA
- Protein Sequence
- MERRYRVILTRDVFEVLENNCSEDNTERLETSEVLPDFEHHCKQLYYHDFECAGDEVLVESSPPPSPGMAASLAAPTQGNGAGNTSPSAVRELIVIPEIPNSIQLQHAMQQVSNTLVEVKGDSSGQSSPSVDAQHTYITVARSWTGRYPEATVKAEEHSDESEGGNGTNYHVQYVTEPQEIYTQGNQTHMEELRTYPVYGVATVANPAPAEGTSFDSNWGGASSAEYSAYGIVVAGDEAEAPSSPATPGAPRMPPATVQWLLDHYETADGVSLPRSSLYAHYLRHCTSHRLEPVNAASFGKLIRSVFVGLRTRRLGTRGNSKYHYYGIRAKPHAAADTSADTAAADKTDLYDAQEGRARSSERETASSPVGISGVAHRQYLGTVTAPDPPELLLDKLPDDVPPSALPALRKHHREHGSSFLEAVAALDTSGVERTRRSFWRGAAGGDAGALCRRTLLALAARRDVARWLRSADLLLYQRAVDLLLPDVLRPIPPQLTQAIRNFAKTLESALAGASNGAPPAASRAQAAAAAALAAALRRYTSLNHLAQAARAVLTNHHQIHQMVLDLNRVDFRVVREQAAWACACAAAPHALRLETDFKATLCRGASLEQWAAWLEGCVGAALLPHEARPGYTRRARRLLLHWSFYSSLVIRELTLRSAASFGSFHLLRLLYDEYVSYLVERRVAAHRAAPPIAVMQRALDDDDDVAEDNSRGDGDDDNPDWEWDDEDEEDDEPLDNKKHKLND
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00235614;
- 90% Identity
- iTF_00235614;
- 80% Identity
- -