Bman009821.1
Basic Information
- Insect
- Bombyx mandarina
- Gene Symbol
- PRDM9
- Assembly
- GCA_003987935.1
- Location
- NW:2356158-2360075[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.095 5.9e+02 0.2 0.1 27 46 222 241 218 244 0.90 2 9 0.046 2.9e+02 1.2 0.0 12 46 256 290 249 296 0.82 3 9 0.0089 56 3.5 0.0 22 52 295 325 289 326 0.85 4 9 0.0094 59 3.4 0.0 21 52 322 353 320 355 0.87 5 9 0.0096 60 3.4 0.0 21 49 350 378 346 381 0.86 6 9 0.0035 22 4.8 0.0 21 52 378 409 375 411 0.88 7 9 0.00057 3.6 7.3 0.0 22 49 436 463 428 466 0.84 8 9 0.0028 18 5.1 0.0 21 46 463 488 461 491 0.91 9 9 0.001 6.4 6.5 0.0 21 52 491 522 487 524 0.88
Sequence Information
- Coding Sequence
- ATGCAACAGATATACGACAGCAACAACAAGCCGTCCCACGTGGTGGACGCCGCCGATCCGAACCGCTCCAACTGGATGCGGTACGTGAACTGCGCCAGACGCTGGACCGAACAGAATCTGGTTGCGTTCCAGTATCAAGGGCAGCTGTATTACAGaacgataaaaataataccCCGCTTCACTGAGCTCATGGTGTTCTATGGTGGTGCATTCGCGAACATTCTTCACATTAACCTCAGCAAATACAACGCGCCCACAAATTACGCTCAGAAATTCGGCGCGTCACCTCCAAAAAAAGTTAAAGCatcaaaaaaattagaaatagcAGAAAGAACAAATAGAAAATCCCAGCAGACGGACATTTTTATTCCTGTGGATATCAACGAAAAGCCAAGTGTTGCAGTTGAAAAAAAAGTTTCCGAAAATATGAATTTGaacaataattcaataaaatcaattcaaaattataaaaataaatcaaaaacccTACGTGATTCAGTTAGTTATAATGACGACAATAGGAATTCTAAAGTTGATAATAAGTCGCTTACAGATAAAAATACTGAAATAAATCACGAATCTAAATTTGCGGATAAAACGAAATCTGACCTGaataagaaaaatgtaaaaGTTGAGAATAACGTGAATAGGGAAATATTTATATGTGATATTtgcaattttaaaatagctGAACGCCGCATGATAGAGAAACATATGACGCTTCATAATAAGGGTTATGTTTGTAAAgtacgtgataaaaaaaatacagaaaaaatcgACTTAAAAATACATCTAAATAAACCTTACAGTTGTGAAGTGTGTGATAAAAGTTTTACATATAAAAGTGACTTAGAGAGACATATAAGAATACATACCggagaaaaaaaaccttacagtTGTGACGTGTGTGATAAAAGTTTTACACAAAATGGTCATTTGAAGGAACATCTGAGAATACATACCGGAGAAAAACCTTACAGTTGTGAAGTGTGTGATAAAAGTTTTACACAAAAAAGTTCCTTAAACATACATCTAAGAATACATACCGGAGAAAAACCTTACATTTGTGAAGTGTGTGATAAAAGTTTTACACAAAAAGGTTATTTGAAGGAACATCTAAGAATACATACCGGAGAAAAACCTTACAGTTGTGAAGTGTGTGATAAAAGTTTTACACATAAAAGTAACTTAAAGGGACATCTAAGAATACATACCGGAGAAAAACCTTACAGTTGTGAAGAGTGTGATAAAAGTTTTACACATAAAAGTTCCTTGAACATACATCTAAGAATACATGCCggagaaaaaaaaccttacagtTGTGACGTGTGTGAGAAAAGttttacacaaaaaagtacCTTAAAGAGACATCTAAGAATACATACCGGAGAAAAACCTTACAGTTGTGAAGTGTGTGATAAAAGTTTTACACAAAAAAGTAACTTAATGGGACATCTAAGAATACATACCGGAGAAAAACCTTACAGTTGTGAAGTGTGTGATAAAAGTTTTACACAAAAAAGTAACTTAATGGGACATCTAAGAATACATACCGGAGAAAAACCTTACAGTCGTGACGTGTGTGACAAAAGTTTTACCCGCAAAGGCATCTTAAAAAATCATCTCGGAACACACCAAAAGAAAACCACGTAA
- Protein Sequence
- MQQIYDSNNKPSHVVDAADPNRSNWMRYVNCARRWTEQNLVAFQYQGQLYYRTIKIIPRFTELMVFYGGAFANILHINLSKYNAPTNYAQKFGASPPKKVKASKKLEIAERTNRKSQQTDIFIPVDINEKPSVAVEKKVSENMNLNNNSIKSIQNYKNKSKTLRDSVSYNDDNRNSKVDNKSLTDKNTEINHESKFADKTKSDLNKKNVKVENNVNREIFICDICNFKIAERRMIEKHMTLHNKGYVCKVRDKKNTEKIDLKIHLNKPYSCEVCDKSFTYKSDLERHIRIHTGEKKPYSCDVCDKSFTQNGHLKEHLRIHTGEKPYSCEVCDKSFTQKSSLNIHLRIHTGEKPYICEVCDKSFTQKGYLKEHLRIHTGEKPYSCEVCDKSFTHKSNLKGHLRIHTGEKPYSCEECDKSFTHKSSLNIHLRIHAGEKKPYSCDVCEKSFTQKSTLKRHLRIHTGEKPYSCEVCDKSFTQKSNLMGHLRIHTGEKPYSCEVCDKSFTQKSNLMGHLRIHTGEKPYSRDVCDKSFTRKGILKNHLGTHQKKTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00236025;
- 90% Identity
- iTF_00236025;
- 80% Identity
- iTF_00236025;