Bman005727.1
Basic Information
- Insect
- Bombyx mandarina
- Gene Symbol
- -
- Assembly
- GCA_003987935.1
- Location
- NW:1075630-1102757[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 4.1 1.8e+02 2.4 1.5 1 23 54 77 54 77 0.94 2 22 0.08 3.6 7.7 2.1 1 23 84 107 84 107 0.97 3 22 3.1 1.4e+02 2.7 4.3 1 23 192 214 192 214 0.97 4 22 0.075 3.4 7.8 0.4 2 23 220 241 219 241 0.92 5 22 0.54 25 5.1 1.7 1 23 247 269 247 270 0.95 6 22 0.21 9.4 6.4 3.2 2 21 506 525 505 526 0.94 7 22 7.3 3.3e+02 1.6 1.4 1 23 625 647 625 647 0.79 8 22 5.8 2.6e+02 1.9 0.2 1 21 653 673 653 674 0.83 9 22 0.32 14 5.9 0.3 2 23 782 803 781 803 0.96 10 22 0.11 5 7.3 0.9 3 23 885 905 883 905 0.96 11 22 0.022 1 9.5 2.0 1 23 913 935 913 935 0.98 12 22 0.14 6.4 7.0 3.1 1 23 971 993 971 993 0.95 13 22 0.0002 0.0092 15.9 4.0 1 23 1001 1023 1001 1023 0.99 14 22 0.0024 0.11 12.6 0.8 1 23 1105 1127 1105 1127 0.97 15 22 3.5 1.6e+02 2.6 0.7 1 19 1181 1199 1181 1203 0.90 16 22 1.1 52 4.1 0.0 2 22 1210 1230 1209 1231 0.89 17 22 0.02 0.89 9.7 0.3 1 23 1297 1319 1297 1319 0.95 18 22 0.027 1.2 9.2 0.2 1 23 1325 1347 1325 1347 0.95 19 22 0.0057 0.26 11.4 2.6 1 23 1437 1459 1437 1459 0.97 20 22 0.00014 0.0064 16.4 1.4 1 23 1465 1487 1465 1487 0.99 21 22 2.1 96 3.3 4.2 1 23 1579 1601 1579 1601 0.96 22 22 0.41 19 5.5 4.3 1 23 1615 1637 1615 1637 0.97
Sequence Information
- Coding Sequence
- ATGCTTAAGCAGATGTCCTCGCCGGCTGACGCGCAATTCGGCGAGGTCACGACAGTCGCGCGCGCCTTCGAAGGCCGCCTCCTCGGCGACGTGTCCTCTGGCGCTTCTTCAGACACCGCCGAAGATTTTGAATTGCCCCACTGTAAGATAAGAAGAAACTACAACTGTACAAAGTGCACGTTCTACACTCAAAATCCACGCGCTTATCTGGTACACACGCGTGACACTCATTTCGTTAAGTTGAAGATATATGAATGTCCCCACTGCATCTATGCCTCGAGGCACAATCAGAAACTCGTAAGACACGTTAAGATGGTCCATGATGACTTACTTTTGCAAACGACCGCAAAAGTCGATTTCGAGATGCCCCAAACAAATGGTGGCTATGTTGAAATTGAATCGCAAGAACGGCAAGATAGAATGGAAGATATGCTAGAAGAGATCGAGGAAATCGACGATATACAGCTTGACATGGATGAGTGCACTGATGATAAGACTGACCGTTCTTGCGAAATAGAATTTGAAGAAGAACGATTTAGAGGCGACACTCCGTTGAAAGGCAAGGATAAACTTTTCTCCTGCGATAAGTGTAACTATGTGACACATTTACGAGCGCGATTCACCAAGCACGTCAAATATCATTCGATGCCCATGATCAAATGCATAGTTTGCGACTTTAGAACACCGTACAAATGGAACTTAGATCGTCACATGAAAAATCACGGTGGTATCGGAAGTTTTAAATGTTCAATGTGCAACTTTACTGCGGATATAAAGCAGAGTTTGACTGTACATGAAATGAATCACCACACGCCACAGGCGGGCCACTCGCACGTCAATCGTCGTCGCAATCGGGTGGGCGCCAGTGACGCAGCACAAGCGGACGAAGCGAGTTTGCTTCTCATAAAGGAAGAGGAAGGGAGCGGCGATTCACGATCCTCACACTCCGCTTCGGAAATGGGATTACAGAATATGGAGAAGGACCTCTCCTGTAATAGTGATTCAAACGACACCTCGGAAGCTCCAAACAAGATCTCACATTTTGTTCACAATGATCACAGTCAGCAGTCGCCGAGCAGCGGCACAGACGACTCAAAGGgacaaaggaataaaaaaactcCTCGACCCCTGCCCCAACTCATACCCCTAAACACGTCAACGCCCAATCAAAACAAAACCACTAACAATGAGCCGCCAgccaaaaaaatgaaattatgctCAGATACCGAAACGCCCGACACTATGATTTGTAATCCAGAAAGTCCTACATACGACAATTGCTTtaccaataatacatttatgaaGGATACCGAGTGCCGAAAGAAAAACGAATCATTCTTTGACAAACTAAAAAAGCGACTGTTGACAGAAACCGGCGAGGAGGGATCGCTTATATGCAAAAACTGTAGCTTTCAAAGCAAATGTTTGTCAGAGCATTCGGTACACGAAAAGAATTGCATACCATTAGCGAGCAAAAGCATGACAAACACGCTAATGCCTAGTTCAGGTTCAACGCGTTGCCAGAACTGTAGACACAGATGTAAATCGAGTGCCGATCTATATGTTCATATGCAGAGCTGTGGGAAAAGTactaatttgaaacaaaatgaaatttctCACGACCAGAATTCGGCAAGCGACGCCGGTAATATAAATCGTGATAAAGACGTTGAACCGCATCCAATGGAGAACGTTGTTTTTGTTTGGAACAATATCGAGCCGAACGAGCCAAACAAGTTCGAAATACCATTAGACATAAACATAAATGACGATTCAACGCTTCCAGATATGACGCGAACCTACGAAATTGAGTTAGTCGATGAAAACGAAAGTATGAACTTATCGCCGAGTCAGGCGGCCGGTAAAAACGTGTTCAAATGTCCTCATTGTTCCTTCTGGGCCTCGACTGCGTCCAGATTCCACGTCCACATCGTaggacatttaaataaaaaaccattcgAGTGCTCTATCTGCAAATATAAATCGAACTGGCGGTGGGATATAACGAAGCATATCAAATTAAAATCCGTTAGAGATCCAGATCACAACGATGCCAAAGTATTGATGACCGATGAAACGGGCAGAAGGAATTACAGCAAGTACACTAAATTCTTAGCTATACCTGTGCCTAATGAAAATGGAAAAACTGAATTTCGTTATCTCGATCCGAACACTTACGTTGACGATACTATGGATGTCGACGACCCCGCCGACGAATTCAACGATACCAATACAATATACGATATGCAACCGTTAAACCTCCAAACTAAGCACTTTGAATTCCAAACATCACTTGAATCAATCGCAAATCAAGAtaagaaagtaataaaaaggACACTCTGGAAGTGTAAAAAGTGCAATTACAAaGATCCATCAAAGGATGCGTTATTAGAGCACGTCCGTGAACACGCCAAGGTGGAAGGTGCGAGTGATGAGGTACGAAATAAGAAACCAGAAAGTTCTATAGATCCAGCGGACTTGGCATATCGTTGTGGGCATTGCCACCAGCTATCGAATTGGAAACACGTAATACAGCGTCACTGTCGCTTGAAGCATAACGGCGTTATAAAAGTCATAACAACGGTCAAACAGAAGCCAGAACTGAACAGTGCCGTTGGATCGTTAACAATCGACGACATCACATCTGACTTTTGTACCAAATGTCCATTCAAATCGAACGACAAACAAGCACTCTTTATTCATTTACAACAACACCAACCGTCAACAAACTCCGTATTTAAGTGCTACTTTTGTCCATTTTTTGTGAAAAACGAAAGTGAACTGATACAACATTTACATGTTCACGGCGTGGAAGATCCAGAAGATTTTATCTCTAAGGCCAGGGGTTGTAGATCGCCATTGCCAGATTTAGCCTCTGCCTTAACGCCCCAAGGTGCTTCGACTAAACGACATAGATGTTCAGAATGTCCATATGAGACAAATAGCAAATCGCAGTATATGTATCACGAACAATTTCACCGGCTACCTGCTGATACTCCTTATAAATGCCCCGAATGTAACTATAGCGTTTCGAAACGGCATTTGCTTCATCAACACCTACGAGTGCATGGAATCCATCCAAAGAAAAATGAGAGCGAAGCGGAGCTAGAACTAATGTTAAGGGCAGACGATATTTCCGATGCGGCCTCAAATTCGTTCAATGAAATTCCGTTTGTTTGGGTGTCGGCTAAAAACGAGTTCCACAAAATGTACAAATGTCGTTATTGTTCGTATGTGAATTCGCAAAAATGCAAAATCCCAATACACGAGAAAATTCATTGCCTCGTTTTCGAAAACGACGCATCCGTTTACTACAAATGCTCCGAATGTAAGTTTACTTTTGACAATGCGGTAAAATTGGCCGAACATTCCAAATTACACGGTGACTTATACGGACGGATTTATTGCCCCGTCGCGGACGACATTCCTGACGATGAACAAGTGGCTAAATTACGTAAGGTCATTGAACTTGAAAAATCGGGAAATAATGATTCGTCGCCCCTTCATGAGGATGGTGAAAGCAAAGAAATCAAAACTTTGTATTTCTGTCAACTGTGTCCTGCACGTTATTTTACGGATACCGAACTACAAGTTCAcgataaaaatcataattcaaaCCTCTCCGTCAAATGTAAAAACTGCAACTTCGCGGTATCAGAAGAAAGTGAATTGGTTTTACATGCCGTAGCTCATTCTGATGAGTACCACACGAAAACCAGAATGCTTAAATTCGCCCACAATTCTCATCCTGCCCACAGGCCGCCTTGTTTGGAGTCTATTCGGACCGAAAGTGGCGTTGAAATTTGGGTGatcaatcacaataaaaaacatgaaattgtAGAACTAAACAACAAGAAATCCCAAGAAGTCAAACATACACctaaacaatataattgtaaagAATGTCCCGCCAAATTCTTTAAAGGTTCTGCTCTGAATTACCACATGGGCTTACACGGCGGCGAAGgcgaatataaatgtaaaagttGTAGTTATGCTGTCAAAAACATTGGCAATTTGGCAAAACACGAAGCATTacatgaaaaagaaaataaaaattccaatGGCGATTATGAATCAGGGGAAGACGCGGATTACAAAAACATTCCAATTTCAGGAACAGACTTATTCCAGAGAAAGACCGAAGCGCAGAAAAGAGTACTCACCGATAAAGATAAATTAGTTAAACCCAACGATCACTTTCCACCCGTGCTTCAAGCCGATCCACAATTCGGATTTTTGATGCATGGTAATCCAGAATTCATATATCCAACTTATCTTAAAAACGGACGTCAGAAAGAAAAACGATACAAATGCCATAAATGTCCGTCTGCGTTTGAAAAAAGGgaacaatataaaatacatttatctttACATGGCTCAAAACAGAGGTACAAGTGTGAGCTTTGCGACTACTCCGTTaaatattatgcaaattatgtccAACACATGCGGAAACATCAAATGAACGATGAAGCACAAGCCGAGAGGAAGAAGGGCGGTTGTGATTTCGTCGAAACTGAAATACAAGATTCAGATAATTTGAAAGGTCCGGAATGTGCGGATAACCTTAAACTGGCAGTCAAAACAATTCCAAAAGGAATGCCTAAAACGGACTtccaacaattttcatataGAGATCAACAAACACTACGCTTATTACAACGCAGGCGATCAATGTCTTCTATTAACAAAGATGCAAGTGCAACTGAATCTACAAATAAGCGTAAATTGCACTCGTGTCTTCTGTGTCCTTACACTAACCATCGCCAGGACGCTTTAAATAACCATTACAAAAGACATGACGATACGGACCTCGTTAACGTTGCAAACTCTGCAAatcataaatgtaattattgcgATTTGATAGTCCTACAATCACATTTCTTGaaagaacatttaaaaacacactTTAACTATCAGAAAGCGTTGACTCCTGAATGTTTTGTTGCAAGTGAAGACGTCAATTTTACAATCACTAAAATCGACAATGAAAGTCAGCCATACGATCTCAGATtagaaattcaaaataaaaatttgacatGCAACACTGATAAAATATTTGTCAACATTAAAACTGGTGAATTATTGgtttaa
- Protein Sequence
- MLKQMSSPADAQFGEVTTVARAFEGRLLGDVSSGASSDTAEDFELPHCKIRRNYNCTKCTFYTQNPRAYLVHTRDTHFVKLKIYECPHCIYASRHNQKLVRHVKMVHDDLLLQTTAKVDFEMPQTNGGYVEIESQERQDRMEDMLEEIEEIDDIQLDMDECTDDKTDRSCEIEFEEERFRGDTPLKGKDKLFSCDKCNYVTHLRARFTKHVKYHSMPMIKCIVCDFRTPYKWNLDRHMKNHGGIGSFKCSMCNFTADIKQSLTVHEMNHHTPQAGHSHVNRRRNRVGASDAAQADEASLLLIKEEEGSGDSRSSHSASEMGLQNMEKDLSCNSDSNDTSEAPNKISHFVHNDHSQQSPSSGTDDSKGQRNKKTPRPLPQLIPLNTSTPNQNKTTNNEPPAKKMKLCSDTETPDTMICNPESPTYDNCFTNNTFMKDTECRKKNESFFDKLKKRLLTETGEEGSLICKNCSFQSKCLSEHSVHEKNCIPLASKSMTNTLMPSSGSTRCQNCRHRCKSSADLYVHMQSCGKSTNLKQNEISHDQNSASDAGNINRDKDVEPHPMENVVFVWNNIEPNEPNKFEIPLDININDDSTLPDMTRTYEIELVDENESMNLSPSQAAGKNVFKCPHCSFWASTASRFHVHIVGHLNKKPFECSICKYKSNWRWDITKHIKLKSVRDPDHNDAKVLMTDETGRRNYSKYTKFLAIPVPNENGKTEFRYLDPNTYVDDTMDVDDPADEFNDTNTIYDMQPLNLQTKHFEFQTSLESIANQDKKVIKRTLWKCKKCNYKDPSKDALLEHVREHAKVEGASDEVRNKKPESSIDPADLAYRCGHCHQLSNWKHVIQRHCRLKHNGVIKVITTVKQKPELNSAVGSLTIDDITSDFCTKCPFKSNDKQALFIHLQQHQPSTNSVFKCYFCPFFVKNESELIQHLHVHGVEDPEDFISKARGCRSPLPDLASALTPQGASTKRHRCSECPYETNSKSQYMYHEQFHRLPADTPYKCPECNYSVSKRHLLHQHLRVHGIHPKKNESEAELELMLRADDISDAASNSFNEIPFVWVSAKNEFHKMYKCRYCSYVNSQKCKIPIHEKIHCLVFENDASVYYKCSECKFTFDNAVKLAEHSKLHGDLYGRIYCPVADDIPDDEQVAKLRKVIELEKSGNNDSSPLHEDGESKEIKTLYFCQLCPARYFTDTELQVHDKNHNSNLSVKCKNCNFAVSEESELVLHAVAHSDEYHTKTRMLKFAHNSHPAHRPPCLESIRTESGVEIWVINHNKKHEIVELNNKKSQEVKHTPKQYNCKECPAKFFKGSALNYHMGLHGGEGEYKCKSCSYAVKNIGNLAKHEALHEKENKNSNGDYESGEDADYKNIPISGTDLFQRKTEAQKRVLTDKDKLVKPNDHFPPVLQADPQFGFLMHGNPEFIYPTYLKNGRQKEKRYKCHKCPSAFEKREQYKIHLSLHGSKQRYKCELCDYSVKYYANYVQHMRKHQMNDEAQAERKKGGCDFVETEIQDSDNLKGPECADNLKLAVKTIPKGMPKTDFQQFSYRDQQTLRLLQRRRSMSSINKDASATESTNKRKLHSCLLCPYTNHRQDALNNHYKRHDDTDLVNVANSANHKCNYCDLIVLQSHFLKEHLKTHFNYQKALTPECFVASEDVNFTITKIDNESQPYDLRLEIQNKNLTCNTDKIFVNIKTGELLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01490634;
- 90% Identity
- -
- 80% Identity
- -