Bman010678.1
Basic Information
- Insect
- Bombyx mandarina
- Gene Symbol
- -
- Assembly
- GCA_003987935.1
- Location
- NW:2200218-2204876[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00058 0.026 14.5 2.1 1 23 222 245 222 245 0.97 2 17 0.018 0.8 9.8 1.4 1 23 250 272 250 272 0.98 3 17 0.013 0.59 10.2 4.1 3 23 304 325 302 325 0.94 4 17 4.4 2e+02 2.3 0.5 2 13 335 346 335 352 0.88 5 17 0.0034 0.15 12.1 0.8 2 23 386 408 386 408 0.96 6 17 0.00013 0.0058 16.5 0.9 1 23 414 437 414 437 0.94 7 17 0.00068 0.031 14.3 0.8 2 21 441 460 441 461 0.94 8 17 1.8 81 3.5 0.2 2 23 470 492 469 492 0.88 9 17 0.0015 0.068 13.2 0.2 1 23 497 520 497 520 0.95 10 17 0.0019 0.084 12.9 0.3 2 23 534 556 533 556 0.96 11 17 0.0024 0.11 12.5 4.6 1 23 562 584 562 584 0.98 12 17 0.0042 0.19 11.8 0.3 1 23 618 640 611 640 0.97 13 17 0.0029 0.13 12.3 0.5 2 23 644 664 643 664 0.97 14 17 0.0077 0.35 10.9 0.3 3 23 684 705 683 705 0.97 15 17 0.0014 0.065 13.2 3.7 1 23 711 733 711 733 0.99 16 17 0.12 5.4 7.2 6.2 2 23 739 760 738 760 0.96 17 17 0.00012 0.0055 16.6 2.6 1 23 766 789 766 789 0.97
Sequence Information
- Coding Sequence
- ATGCATGAAACCGACCTTGAAGACAGCACAAACAGCATTCTTTGGCTGCACGAAAAGTTGAAATGTCTCTGGAACTGCACAAAGTTCTGTGGGATGTGCTTAGAAACTGAAAATCTGAATGCCATCAACTTGGAGCTGGTTATAAGTCGACAGAAAGAGTCCAAGTCATTATtggatattattaattttatatttagagaTGATgtCGCAAATATAATGTCTTGTTCCTATATATGTGATAAATGCACAGAGAAGACGCTACAATCCTACATTTTTATTAGCAACACAAAGAAATTATCCAAAGTAATAAACACATGTGTTAATGATTTACATTCAAAAGTGACAGATATTAATGAACAAGTATTAAGTACTTTAGAATGTAACAAATCTAACATCGTGATAGTGTTGGAAGAAGACGATGATACTCTTGAAGACATCAAAGAATTAACAACTGTGTCCGAAATAGTGCCAACACAGAATCCTGTACTCAAAAAACTACCACAGACTAATATTAGTAGCTCTAAATCTACAGTTGTGATAGTCGAAGATGATGACGTTTTGAATAGAATTAATACGAACAAGCACATAACCGCGAAAGGTGGTGAAATAGTTATAAATCCTATTAAACTGAATATAGCTCCTTCAGTGCCTCAATATGTAATCTATAAATGCTCAAAATGCACAGCCATTTTCACGACATACAAGTCCTTGAAGGAACACGAAAAAGTAAAACATAGCAGTAAACTTTTTAAGTGTACGGTTTGTTCAAAAGTTTATTTGACCTTACAGTCCTTAGATTTACATTATAAAACTCATGAAGTGGCCCGCTGTAGGTATTGCCTTAAAATTACTAAAGACAATGAGTTGATGTTGCATCTAAAAAAGGAGCATGGCACAATGTTGTCGTGTTGTCTGCATTGTGACAATGTATATTACACCCATGAAGCCTTACAAACCCACATCCGGGTCAGTCACAGTGTGAACAATACAACTGAGAATCCGCAGTGTCAGTACTGTTATTTAGAATTTACTACCTCAAATAAGAGTTTACATAAATGCAAGTTTAATTGTCCGGAATGCACAATAATGCCTTGCATCCATCATGAATATCTAATTAGTTATAGAAACCAGATTTTAAGTCATGCAAGCAAAGCGAAATGCTTGAACTGTGATTACACTACATCGAGAAAGGAATATTTGGTAACGCACGCTAACAGAGAGCATTTAGACCACCATCCGTTCACATGCAGCGAATGTAACATGCAGTTCTATACTAAAGCAAGCCTCAGGATTCACATAGACCAATACCACATTGAGAATACTTGCGAATATTGTGATAAAGAATACAATAGGCCATTCTTCCTACAAAAACACAGAAATCAGtgtaaaacaataattagaaaaattaaatgtgACCAATGTGTAGCGTCGTTTGATAATGTGGTGGATTACGACAAACATGTATTTTTAAAGCACAACAATGGAGGATATAAATGCACATTGTGCAATAAGAGATTCATGGAAGAAATTGAATTGCAACAACACGAGGCAATGATACACAGTAGCACGGTCCAGTATAAGAAGAGGAGTAAACATATTGAGTGTACACTGTgtgaaatcaaatttaaaagtattaaaatgttGCAACAACATCAAGACACGATTCACAAAGCAGGCACTCTGTTTCCTTGCAAGAGCTGTCCGAAGAAATTCTACAGCTTAAAGAAGCTGCAATTGCATCAACACCGACATTACGAAAGGATTCAATGTGAGAAATGCCGAAGAAAAATCATTAGTGCCTTTTACCTCAAGCACGTGATTAAGTGTAGCTCTGAGTGGAACATGAAGAAACATATTTGTGAAATGTGCGGGAAAGCGCTACTTTCAGAAACCGCTTTGAACAATCACATAAAAACACACCAGATTGTCACATGTCCGGTGTGCAACAAACGACTGAAAGAGTCTTTGCTCGAGAAACACATGAcgagacataaaaaaaatgtagagacCACTGGCTATTCAAATATTAAAGCCATACCGATGCGAGCTTGTCCGGTCTGCGGCCACTTGGTACGAAAAAAACTCGATCTCGAAGCGCATATGAACCGCTACCATTACAAAATCAAGCCCTTTAAATGCCAACAATGCAGCAAAGAGTTCTGTGGACGAGCCAGATTGAGGGAACACCAGTTGACTCACGAGGAGAAGTCTTGCATTTGTAACATATGTCATAAGAAAATGGCTAATCGTGTATGCCTTAAAATGCATCTAAGGATACATACAGGCGAATGTCCTTACACTTGTGAGCATTGTGGCGAAAAATTCCGATCATCAAGCATACTCAGTACTCACATACAAAAGAAACATGCCGAGAAGACCGTCTCATGTCCATCTTGCGACAGTATGTTCCATTTTGTGAGAGAAATGAGGCATCACTTCAAGCATGTTCATTGGAAAGGGAAAGACCGACCTTTTGATTATAAAGAAGTTGTGCCTAAAATGTACCACCACCTGTTTGAAGACGGGAGACTGCCCAAACTTGATGACAATGAAACTTGA
- Protein Sequence
- MHETDLEDSTNSILWLHEKLKCLWNCTKFCGMCLETENLNAINLELVISRQKESKSLLDIINFIFRDDVANIMSCSYICDKCTEKTLQSYIFISNTKKLSKVINTCVNDLHSKVTDINEQVLSTLECNKSNIVIVLEEDDDTLEDIKELTTVSEIVPTQNPVLKKLPQTNISSSKSTVVIVEDDDVLNRINTNKHITAKGGEIVINPIKLNIAPSVPQYVIYKCSKCTAIFTTYKSLKEHEKVKHSSKLFKCTVCSKVYLTLQSLDLHYKTHEVARCRYCLKITKDNELMLHLKKEHGTMLSCCLHCDNVYYTHEALQTHIRVSHSVNNTTENPQCQYCYLEFTTSNKSLHKCKFNCPECTIMPCIHHEYLISYRNQILSHASKAKCLNCDYTTSRKEYLVTHANREHLDHHPFTCSECNMQFYTKASLRIHIDQYHIENTCEYCDKEYNRPFFLQKHRNQCKTIIRKIKCDQCVASFDNVVDYDKHVFLKHNNGGYKCTLCNKRFMEEIELQQHEAMIHSSTVQYKKRSKHIECTLCEIKFKSIKMLQQHQDTIHKAGTLFPCKSCPKKFYSLKKLQLHQHRHYERIQCEKCRRKIISAFYLKHVIKCSSEWNMKKHICEMCGKALLSETALNNHIKTHQIVTCPVCNKRLKESLLEKHMTRHKKNVETTGYSNIKAIPMRACPVCGHLVRKKLDLEAHMNRYHYKIKPFKCQQCSKEFCGRARLREHQLTHEEKSCICNICHKKMANRVCLKMHLRIHTGECPYTCEHCGEKFRSSSILSTHIQKKHAEKTVSCPSCDSMFHFVREMRHHFKHVHWKGKDRPFDYKEVVPKMYHHLFEDGRLPKLDDNET
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00236957;
- 90% Identity
- -
- 80% Identity
- -