Basic Information

Insect: Bombyx mandarina
Gene Symbol: prg
Assembly: GCA_003987935.1
Location: NW:423172-426390[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.22 9.9 6.4 1.6 2 23 180 202 179 202 0.85

2 10 0.044 2 8.6 2.2 1 23 208 231 208 231 0.96

3 10 5.7e-06 0.00026 20.8 4.1 1 23 237 259 237 259 0.96

4 10 1.1e-06 5e-05 23.0 3.0 1 23 265 287 265 287 0.99

5 10 1.4e-05 0.00066 19.5 0.1 1 23 293 315 293 315 0.97

6 10 0.00091 0.041 13.9 1.4 1 23 321 343 321 343 0.97

7 10 0.00022 0.01 15.8 3.4 2 23 438 460 437 460 0.95

8 10 0.00024 0.011 15.7 1.5 1 19 466 484 466 488 0.94

9 10 0.0015 0.069 13.2 2.7 3 21 496 514 494 515 0.92

10 10 0.0011 0.051 13.6 0.0 3 23 525 545 523 545 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.22	9.9	6.4	1.6	2	23	180	202	179	202	0.85
2	10	0.044	2	8.6	2.2	1	23	208	231	208	231	0.96
3	10	5.7e-06	0.00026	20.8	4.1	1	23	237	259	237	259	0.96
4	10	1.1e-06	5e-05	23.0	3.0	1	23	265	287	265	287	0.99
5	10	1.4e-05	0.00066	19.5	0.1	1	23	293	315	293	315	0.97
6	10	0.00091	0.041	13.9	1.4	1	23	321	343	321	343	0.97
7	10	0.00022	0.01	15.8	3.4	2	23	438	460	437	460	0.95
8	10	0.00024	0.011	15.7	1.5	1	19	466	484	466	488	0.94
9	10	0.0015	0.069	13.2	2.7	3	21	496	514	494	515	0.92
10	10	0.0011	0.051	13.6	0.0	3	23	525	545	523	545	0.92

Sequence Information

Coding Sequence: ATGAAAATGGAAGATTCCTTTATTATAGCCAATTTTAATTCTCTGTGTCGCCTTTGCCTCGGTAAAAGTAGACTCGCCATCTCAATATTCGGAGCTGCACCTGATGACATTAATAACGTATCATTGACCTCCAAAATAGCTGAATGTTTTGAGTTACAGATCGATCCTAATGATGGTTTACCTGGCAGGATTTGTTACAAGTGCTTATTCAAAGTGGACAAgtgttcaaaattcaaattacaatGTATCCAAAGTGAAAACAGACTCAGACAAATCACAAATCGTATAAATGAAGTAGATACTTCAAACTCATctgaaattactaattacacATACAGCAATTCCCAAGATGAACAGAAACATAAGCCTGAAGATTTTATTGTTGAAGATAGCGTTGTGATGGTGGTTGATCCTAGTCTTGATTATGATTCTTCGGATGATTCTGAAAATGTAGAAACTGTGGAGCAAGAAAATACTGATCGAGGCAATACTCCTGATGCGGATGCAATTCCGGAAACATTTTTCAAGAATGTTTCAATGTGCCAATATTGTGATCAAGCTTTCATTTCACAAGAAAAATGTAAAGAGCATGAACTAAACTATCATGATCCAGACATGCCTTTTAAATGTTATGAATGCAGTTTGGCTTTTGTGGAAAGAAATCAGTATGTACAGCATACGAAACATGTCCATGGAAATGACAAGCCCTATCATTGCCCTGAATGTAATAAATGTTTTGGACGAAGATCTGATCTAAGAAAACATTCTATTGTACATACAGGTATCAGACCTTACCAGTGTCAATTTTGCTTGAAGAGTTTTTCACGTAACACAAACTTGAGCAAACACTTGAGAATACACGCTGGTCACAGACCTCATGTTTGCCCTCTGTGCCCTCGTAGCTTTGTAGCCAAAGGTGACCTACAACGACATGTTCTTGTTCATTCTGGCATGAAGCCTTATTCGTGCAGAAAATGTCCCTCTACATTTGGACGAAGAGATAAGCTCATTAAACATGAACTAAAACATGGAATTGTTGCCACTGAGGATAAACCTGAAGACTATGCCAACAGTGTTAAACAGGATCCAAATGACATTGTTGTCAGTGTCAATCCTTTCAGTAACCTCATGACTTCTCCAACACAAAATTCAGATCCTTCAAACCCTACTTACGAACTTCCTAGTGTTCCTGACCATATTTCTGGGGAAAGTAGTTTTATAAAGATGCAAAAAGATCCCTCCACATCACATAAACAACAAAACTCATCACCAAAAAAGGCTACACCAGTTAAGAACAGAccaaaaaacataaaatgcCATCACTGcacaaaaaagttttcttccctaGATGCATACAAAACTCATGTTTCAATTGCTCATATGGGATCAAGAGGATTTCaatgtaaaatatgttttaagaaattttccaaaaaaaggGAGTTAGATCGACATGCTCCAATTCACACTGGAGGTAAACAATTAGCTTGTGACCACTGTGATAAAAAGTTTACTAAAAAAGACAAATTTGATAAACACAAACAGTCACAGGAATGTTTGGTTGTGAATATGCCTTGTATAGAGTGTGGTGTTACCTTTGAAAAGAAAGCTGACTTGGTTGCACATATTAAATCACACTTCAATGATACCTATGATAAGTTACAGATTCCAGATGTTGAGATTAAAGTAGAGAAAGATCCAGAAATACCATGTGATGAAAACTATTATGATTTGGGAACATGA
Protein Sequence: MKMEDSFIIANFNSLCRLCLGKSRLAISIFGAAPDDINNVSLTSKIAECFELQIDPNDGLPGRICYKCLFKVDKCSKFKLQCIQSENRLRQITNRINEVDTSNSSEITNYTYSNSQDEQKHKPEDFIVEDSVVMVVDPSLDYDSSDDSENVETVEQENTDRGNTPDADAIPETFFKNVSMCQYCDQAFISQEKCKEHELNYHDPDMPFKCYECSLAFVERNQYVQHTKHVHGNDKPYHCPECNKCFGRRSDLRKHSIVHTGIRPYQCQFCLKSFSRNTNLSKHLRIHAGHRPHVCPLCPRSFVAKGDLQRHVLVHSGMKPYSCRKCPSTFGRRDKLIKHELKHGIVATEDKPEDYANSVKQDPNDIVVSVNPFSNLMTSPTQNSDPSNPTYELPSVPDHISGESSFIKMQKDPSTSHKQQNSSPKKATPVKNRPKNIKCHHCTKKFSSLDAYKTHVSIAHMGSRGFQCKICFKKFSKKRELDRHAPIHTGGKQLACDHCDKKFTKKDKFDKHKQSQECLVVNMPCIECGVTFEKKADLVAHIKSHFNDTYDKLQIPDVEIKVEKDPEIPCDENYYDLGT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01490377;
90% Identity: iTF_00236874;
80% Identity: iTF_00236874;