Bman012361.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bombyx mandarina
Gene Symbol
-
Assembly
GCA_003987935.1
Location
NW:142199-168333[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 7.5e-05 0.0034 17.3 0.1 3 23 158 178 157 178 0.97
2 16 2.4e-06 0.00011 22.0 1.2 1 23 184 206 184 206 0.99
3 16 4.2e-06 0.00019 21.2 2.7 1 23 212 234 212 234 0.99
4 16 1.7e-06 7.5e-05 22.5 1.5 1 23 249 271 249 271 0.98
5 16 3.9e-05 0.0017 18.2 3.1 1 23 286 308 286 308 0.98
6 16 2.7e-07 1.2e-05 25.0 1.5 1 23 323 345 323 345 0.99
7 16 0.00012 0.0054 16.6 2.8 1 23 351 373 351 373 0.98
8 16 0.027 1.2 9.2 1.8 1 23 380 402 380 402 0.98
9 16 4.5e-07 2.1e-05 24.2 2.3 1 23 408 430 408 430 0.99
10 16 0.031 1.4 9.0 1.8 1 23 437 459 437 459 0.98
11 16 1.9e-06 8.4e-05 22.3 1.5 1 23 465 487 465 487 0.99
12 16 0.0028 0.13 12.3 0.8 1 23 494 516 494 516 0.99
13 16 2e-06 9.3e-05 22.2 1.9 1 23 522 544 522 544 0.98
14 16 0.0015 0.068 13.2 0.3 1 20 550 569 550 572 0.93
15 16 2.9e-05 0.0013 18.6 1.4 2 23 579 600 578 600 0.96
16 16 2.2e-06 0.0001 22.1 1.3 1 23 606 629 606 629 0.97

Sequence Information

Coding Sequence
ATGGGCGTCGGGGGAGTGGCGCGGGGCGTGGGCGTCCCTGTGCCACCCCCCGGCGACCTACTCGCCACTATCTCAATGTTTGAACAACAGATCAAAGCTGAACCCATGAGCTTCTACTCTCATCCCCATCATGCCCACTCTGGTCCCCCTTCAATAGTCCGTTCAGACTCAAACCAAGGCATAATCAACATGCATCATCAACAACATCAAGAGGATTCCAAGGATAGCCTCATAGTGCAGCAGCAAGTTCAGCATCAACAGGATCTCTTGGAACAACATCAGCAACAGCAACAGGAAATGCAACAAGATGATGATTTGAGCTTTAAAGGAATGGATGACGATGGTGTAGAAATGGACATGGACAGTCGACAGTGTTCTCAGGGAATGGGACTGGATATGGGATCGGTACAAACAAAATTGGAAGTGTCAAACGGAAGCGTTCAATCATCGCCACGGTCCAAGCCTCAAGCATGCAAAGTTTGCGGCAAAGTATTATCATCAGCGTCATCATATTACGTCCACATGAAACTTCATTCCGGGAACAAACCCTTCCAATGCACGGTATGCGAGGCTGCGTTCTGCCGGAAGCCATATTTAGAAGTGCACATGAGAACACACACCGGTGAGCGTCCGTTCCAATGTGACTTATGTTTGAAACGATTCACACAAAAATCCAGCTTAAATACGCACAAACGCGTCCACACAGATGAGCACATGCGCGCGTTGTTGGTGAAGAATCGGCCCTACAAGTGTGATCTCTGTCAAATGGCTTTCACGCAGAGCTCCAGCCTCAACCGACACAAGAAAATACACACGGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTGGGACGACATGGGAAAATACACACCGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCCTATCAATGCGACATCTGTGACAAGCGGTTTACTCAGAAGTCCAGCCTTGGCACTCATAAACGTATCCATACCGGGGAGCGGCCGTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAAATACATACGGTCCAGGGAAGACCGTTCCAGTGCCTGTCGTGTCCCGCCGCCTTCACCTGCAAGCAATACCTGGAGATTCACACGCGCACCCATACTGGCGAGCGGCCCTATCAGTGCGACATCTGCCTGAAACGCTTCACGCAGAAGTCGAGTCTCAACATACACAAGCGGACGCACTCAGTGCAGGGCCGGCCTTTCCAGTGCTTGCAGTGCCCTGCCGCCTTCACCTGCAAGCAGTACCTCGAGATACACAATCGCACGCACACCGGCGAACGACCTTACCAATGCGACGTCTGCCTCAAGCGGTTCGCGCAAAAGTCAACACTCAACATACACAAACGAACGCACACAGTGCAAGGTCGTCCGTATCAATGCATGGAGTGCCCGGCGGCGTTCACGTGCAAGCCGTACCTGGAGATACACACGCGCACGCACACGGGCGAACGTCCGTTTGAATGCGACGTCTGTTACAAACGCTTCACACAGAAATCGACGCTCAACATACACAAGCGCATTCATACCGgtGAACGTCCTTACGCGTGTGATATTTGCCAGAAACGGTTCGCCGTGAAGAGTTATGTAACGGCTCATAGGTGGTCCCACGTAGCGGACAAGCCGTTGAACTGCGACCGATGCTCGATGACGTTCACGTCCAAGTCCCAGTTCGCACTCCACATCCGCACGCACGCAGCCGGCTCGTGTTACGAGTGCAGCGTCTGCGGACGGAGCTTCGTCAGAGACAGCTATCTAATACGTCATCACAATCGCGTACACCGCGACAACCACAGCAACATGTCTGCGAACAGCATTGGCATTAACAGCGTCGCCACGAACACAAACAACTCGAACAACAGCAACTACGACTCGCCCGGCGTTTGTGACTTGAGCTTTGTGCCGATGGTGAACCGATACATGACGTCACAGGGAACTCAAGTGTCCATGCAAGACACCCAAAGCAAGATGTCCGCAATGTCCCCGCAATCCATCGCCTCTATATCGTCGCCCCCTCCCTCGCACACGCCCACGCCGCAGCCGCAGATGTCCGGCCAGCTGCATCTAGCGGACTGA
Protein Sequence
MGVGGVARGVGVPVPPPGDLLATISMFEQQIKAEPMSFYSHPHHAHSGPPSIVRSDSNQGIINMHHQQHQEDSKDSLIVQQQVQHQQDLLEQHQQQQQEMQQDDDLSFKGMDDDGVEMDMDSRQCSQGMGLDMGSVQTKLEVSNGSVQSSPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCEAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALLVKNRPYKCDLCQMAFTQSSSLNRHKKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHTRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMTFTSKSQFALHIRTHAAGSCYECSVCGRSFVRDSYLIRHHNRVHRDNHSNMSANSIGINSVATNTNNSNNSNYDSPGVCDLSFVPMVNRYMTSQGTQVSMQDTQSKMSAMSPQSIASISSPPPSHTPTPQPQMSGQLHLAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00686557;
90% Identity
iTF_00236821;
80% Identity
-