Bmaj017734.1
Basic Information
- Insect
- Bombylius major
- Gene Symbol
- -
- Assembly
- GCA_932526615.1
- Location
- CAKOBF010000888.1:10200-12606[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 5.5e-06 0.057 13.7 0.2 12 48 354 391 346 393 0.86 2 6 1.1 1.2e+04 -3.3 0.0 24 47 446 469 444 471 0.81 3 6 0.00057 5.8 7.3 0.0 21 48 554 580 544 586 0.80 4 6 0.046 4.8e+02 1.2 0.1 22 44 611 633 606 643 0.79 5 6 0.17 1.8e+03 -0.6 0.1 16 42 633 662 628 671 0.66 6 6 0.00072 7.4 7.0 0.0 21 48 694 721 687 724 0.89
Sequence Information
- Coding Sequence
- ATGGACTCATCACTTGATAATATATGTAGAACATGTCTAACTTCTGGTGGACATTTAGTATCATTATTTGAAGGAAAATTTACAAATGCATCTTCAGTTGCACAAATGGTCATTGATATATCTTCGATTGAGTTATCATCTTCTGATAATTTACCAAATAGAATTTGTTTGGCATGTGTAGCAGAAGTAAATCGTGCATACTCTTTTCGTATAAAATGTCAAAACTCTGATATAACTTTAAAACAGATTTTTTGTCCTATAAACTTGTTACAATCAAGTATTGAAATAACCGACGATATACTTGAAAATCAACAACGTGATTTTCAAGAAGGACAAATTATATCTAGTTGCAATAGTAAAGCAAATAATGATTTATTTCAAACTGAAGAAGAACAACGGCTAGATCAATTACATAATGAACACCAAAATACATTTATAATTGCAGACGAAAATTTTCAGTGTATATCAGCAACAGAAATTTTAAAAAATACATCAGAAAAAAAACTAAAAAAGAGTAACGGACATACATTGGTTTGTCTAAATGAGGATCAAGAAATTTTACATGAAATACCCCCTAAAATCCAAAAATATGATGATGATGTAAATAATGTAGCTGGAATTATGAAACAGAAAAAGGAATTATTAGAAGATGAAATGAACAATGAAAGATTTACACAGAATGTAACAGAATCAAATACAATTTTCATGGATAATAGAGATGAATTTGAGGATTCAGATATTCAGCAAATCACTGATGACTATCAAGAAGAAGAAGAGGAAGAAGGATTAAAAGAAGAAAAAGAAGAAGAAGAGGAGGAACAAGAAGGTGTAATAGAAAAAGATAATCAAAAAGAAGAACAACAAAATGATAATGTTGATAAAGCTAGAGACGATGAGGGACAAAAGATTGCAGAAATAGTAAATGAAGATGACCATGAAAATCAGTCATCAATTATTTACAGTTGTACAAGTTGTAGTGAAAATTTTGACACTGAAGATACATTTCAAGAGCATATTGAAAGTTGTTTAATAAAACATAATTTAAAAGAGGTATCAAGTAAATCAAAACCACGATCAAAATCAAAAAAAGAGAAAAAACCAATGAAATGTCCTTATTGTCCAGTTGATTTTATACATCCAAAAAATTTGGAGAAACACGTTAAAAAATATCATGAAAATGATATAAAAAAAAAAGATGGAGAAATTAGGCAAAAAACTATTGCAGAAAAAAACAAAACTGATGAAAATGAAGCAAAAGATTGTTCAGAATCAGATTGTAATATAGAAGAAATTGATGTTATTGATATAAAGCATAATCACGAAATTTTAAATACACCTTTTAAATGTTATAATTGTGGTGCTGGTTTTATTAAAGAGAAATCATTAAGTTATCATTTAAAATTGAATAAATGTACTGAAAAACAATTTGGATGTGTTTCATGTAAAAAAGTTTTTATAGAGAAAAAAAGTCTTCTAATACATATGAAAACTCATACAACATTCGCTTGTTCAAAATGTCCAAAAACATATTCTCGACAGGATAAATTAAAAGCTCATGTTGATGTTGCTCATAGCAATGTTAAAAGAAATCAATGTCATTTCTGTAGTAAAGtttttacaatgcaatctagccttaaggatcatattagaactcatagtggtgaaaaaccattcctttgttcgttatgcggtaaatcattcagtcaaaatacaaatttaaaacaacatatgatgagacatacacaaacaaaaccatttcaatgtaatcattgtgattgttcatttgttagtaaaggtgaattaaattcacatattcgtaaacatactggtgatcatccatttgtatgtgatatatgtgctacagcttttacaacatcaagttcattagtaaaacataaacgacgtcatactggtgaacgtccatatgcttgtgaatattgtccaatgagatttgcttcattaggtgttttaaaaaatcatcgtcgtacacatactggagaaaaaccatttatatgtggttattgtgtaaaatcatttgcacaaaaaagtgattgtgttacacatatgagaactcatactggtgaaaaaccttatatatgttcagtttgtgggattggttttcaacaatctagtacattaaaaacacatttaaaatcaATTCATAATGTAATTTATAGTAAAGGAGAAAAACAACAACAACAACAACAACAAGAAATTGATGATTCTGAAACTGATATTCTATCTGTTGTATAA
- Protein Sequence
- MDSSLDNICRTCLTSGGHLVSLFEGKFTNASSVAQMVIDISSIELSSSDNLPNRICLACVAEVNRAYSFRIKCQNSDITLKQIFCPINLLQSSIEITDDILENQQRDFQEGQIISSCNSKANNDLFQTEEEQRLDQLHNEHQNTFIIADENFQCISATEILKNTSEKKLKKSNGHTLVCLNEDQEILHEIPPKIQKYDDDVNNVAGIMKQKKELLEDEMNNERFTQNVTESNTIFMDNRDEFEDSDIQQITDDYQEEEEEEGLKEEKEEEEEEQEGVIEKDNQKEEQQNDNVDKARDDEGQKIAEIVNEDDHENQSSIIYSCTSCSENFDTEDTFQEHIESCLIKHNLKEVSSKSKPRSKSKKEKKPMKCPYCPVDFIHPKNLEKHVKKYHENDIKKKDGEIRQKTIAEKNKTDENEAKDCSESDCNIEEIDVIDIKHNHEILNTPFKCYNCGAGFIKEKSLSYHLKLNKCTEKQFGCVSCKKVFIEKKSLLIHMKTHTTFACSKCPKTYSRQDKLKAHVDVAHSNVKRNQCHFCSKVFTMQSSLKDHIRTHSGEKPFLCSLCGKSFSQNTNLKQHMMRHTQTKPFQCNHCDCSFVSKGELNSHIRKHTGDHPFVCDICATAFTTSSSLVKHKRRHTGERPYACEYCPMRFASLGVLKNHRRTHTGEKPFICGYCVKSFAQKSDCVTHMRTHTGEKPYICSVCGIGFQQSSTLKTHLKSIHNVIYSKGEKQQQQQQQEIDDSETDILSVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00235221; iTF_00234186;
- 90% Identity
- iTF_00235221;
- 80% Identity
- iTF_00235221;