Bmaj000783.1
Basic Information
- Insect
- Bombylius major
- Gene Symbol
- -
- Assembly
- GCA_932526615.1
- Location
- CAKOBF010000022.1:608946-611564[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0019 0.11 13.1 0.5 1 23 79 102 79 102 0.94 2 20 0.065 3.8 8.3 0.0 2 23 107 129 106 129 0.95 3 20 0.0033 0.2 12.4 3.7 1 23 135 158 135 158 0.96 4 20 0.00085 0.05 14.3 1.6 1 23 165 188 165 188 0.93 5 20 0.00015 0.0089 16.6 2.7 1 23 192 214 192 214 0.97 6 20 0.38 23 5.9 0.4 3 23 255 275 254 275 0.96 7 20 0.035 2.1 9.2 0.9 1 23 281 303 281 303 0.98 8 20 0.28 17 6.3 0.3 5 23 378 396 375 396 0.93 9 20 2.1 1.2e+02 3.6 3.0 1 23 423 446 423 446 0.95 10 20 0.00011 0.0064 17.1 2.5 1 23 452 474 452 474 0.98 11 20 0.00065 0.038 14.6 4.7 1 23 480 502 480 502 0.97 12 20 0.097 5.7 7.8 1.9 2 23 510 531 509 531 0.98 13 20 0.017 1 10.1 0.1 2 23 538 560 537 560 0.95 14 20 0.037 2.2 9.1 0.5 2 23 568 590 567 590 0.95 15 20 0.0021 0.12 13.1 1.6 1 23 596 618 596 618 0.96 16 20 3.3e-08 2e-06 28.1 1.3 1 23 624 646 624 646 0.99 17 20 8.7e-05 0.0051 17.4 3.0 1 23 652 674 652 674 0.97 18 20 0.00017 0.01 16.4 0.3 1 23 682 704 682 704 0.97 19 20 6.3e-05 0.0037 17.8 4.2 1 23 710 732 710 732 0.97 20 20 1.1e-06 6.5e-05 23.4 0.9 1 23 737 760 737 760 0.97
Sequence Information
- Coding Sequence
- ATGTCAGAACCATCATCTTGGTATACTTATCTTGAAAAACGAGAAGAATTAGAAGAAAAATATATTGATGATAATGATGATGATGATAATGATAAACAACAATATAAAAGAGTAATTGAGACTACAGCAACAATGGATTCAATATCATCATCATATACTGAATTACAATCGAATGGTCTTCAAAAATCACATGATATTGATAGTAATTGTGAAGTATTTTATATTATACCACGACATAAATGTAATATTTGCAATGAAATATTTAATGTTACTGAACAATTATCAGATCATTTAAATGATATTCATACACCAATAGATCAATGTTTATTATGTGGTGAAATATTTGATATATCATTAATGTTAATCGAACATATGAAAAATGAACATATAAATATAAATCCATATCGTTGTAAATATTGTGCAAGACGGTTTTCAAATCGTAATTTAATGTCACAACATTATAAATATTTACATGATATATTACAGAAACCATATGAATGTGATATATGTGGTACATCATTTTTAACATTATCTGATTTACAAAATCATAAATCACATAAACATAATAAAATATTTAATTGTCCATATTGTGTTAAATGTTTTGAAAAAAGTAATGAATTAAAATATCATTTAAATATTCATGTTTATCCAGAAAAAAATATTGATAAAAATTTAAATGAATTTGATGTTATTACATTAGAAGATACAATAACACATGATAATATTAAATTAGAATGTCAAGCTACAATAAATATTGAAAATTGTTATATATGTGGTAAATATATACAAATAAATGAAAATTTTAATGAACATTTAAAAAATCATAAAAATGAAAATTTTTTTGAATGTCCAGATTGTTACAGTTTATATGAAAATTTTAATGAATTTATAAAACATATGAAAAATCATTTAAAAGTTAAAATAACAAATAATAAAGTAACAAAATTATCAAATGTTAATGTTAAAACAACAACAACATCATCTGAATTTATACCAAAAataaattgtggatttatgacaccaccacatactgaatcatcagaaatatcaagaccaataacaacagtagcagcattaataataGAAAATGATAATAATATAAATAAAAATACATTTGAAAAAATTTGTATTTTATGTAAAATGATATTTCGTAATATTGAAGAATATGATAAACATATGAAATATCATAATAAAACAATGATATTACGTAATACTGGACCATTAGGTACAATATCATGGAATAATAAATTACATAAATCATATCCATTTTGTTGTAAACTATGTAAACGTTATTTTGTTCTTGGTACATCACTTTTATTACATAATAAAACAATTCATAATGAATTaaaaccatataaatgtaaagtgtgtacaatgtcatttgctcaattatctgaattacataaacataatgaaacacatcctggtgttaaacaatattcatgtaaaatatgtaatatggaattttcaaaacgtaaaaatctaacattacataaacaacatcatacaggaagaaatatacataataaatgccgttattgtggtaatgattgtccagatactgaacgtttacaagaacatattaaaaaacatttaggtgatgatatacaagaatgtgaattctgtgaaataccatttgctcatttaattgatttaaatttacatattagccgtgtacataatgtaaatccattgcgatggcaatgtagaatttgttcaaaaatatgtagttcagctggtgaaataatgcaacataatcgtgttatgcatgctggtgaaaaaccatataaatgtaatgattgttatagatcatttgcattacttcatagtttagttaatcataaagttgttcattctggacaaaaagattttaaatgtgaatattgtggtaaaggttttagttatgcatcatatttaaaaatgcatattcgtacacatactggtgaaagaccatatatttgtcaattttgtccaaaaacattttcacgtttagctaatctacatgaacataaaaaacaacattcatgtaaaacaggaagaccatatacatgtgaaatatgtggtaaaggttatacatcaatatcaagtataaataaacataaattattgcataatggtattaaaaaatttcaatgtaatatatgttcaaaatcttatacacaaAAAGCACATCTAGATCGTCATAAATATTCACATAATATTAGATTATTTACTTGTAATATATGTAATAAAGAATTTAAAAGTCCTTTTGCATTAACACGGCATAGAAAAATTGTTCATGGCATTAATAAAACACAAGATAAAATTGAAGGAATGATTCGTGAAGTTTCAGGTGAAACGAATAGTAGTGAACATGGAATTGATAATGAGTATTATGATATTAGCTATGTTAATTTTGAAAATGTTGGAAAGGAGGAAGAGGTAGAGGAGGAGAATTATGATTTTTGCAATAAAAATGCAAATGAAAATAATGAAGTGGAAGAATTAGAAGATAATGAAATTTCAAAAAATGTTTCAAAAGAAGAAAATAAATATGAAGATGAAACTGATATTTATCAAATAGACGATAATAATGACGATGAGGAGGCTGCTATTCGTTTTTTAGTTGATTATGAATAA
- Protein Sequence
- MSEPSSWYTYLEKREELEEKYIDDNDDDDNDKQQYKRVIETTATMDSISSSYTELQSNGLQKSHDIDSNCEVFYIIPRHKCNICNEIFNVTEQLSDHLNDIHTPIDQCLLCGEIFDISLMLIEHMKNEHININPYRCKYCARRFSNRNLMSQHYKYLHDILQKPYECDICGTSFLTLSDLQNHKSHKHNKIFNCPYCVKCFEKSNELKYHLNIHVYPEKNIDKNLNEFDVITLEDTITHDNIKLECQATINIENCYICGKYIQINENFNEHLKNHKNENFFECPDCYSLYENFNEFIKHMKNHLKVKITNNKVTKLSNVNVKTTTTSSEFIPKINCGFMTPPHTESSEISRPITTVAALIIENDNNINKNTFEKICILCKMIFRNIEEYDKHMKYHNKTMILRNTGPLGTISWNNKLHKSYPFCCKLCKRYFVLGTSLLLHNKTIHNELKPYKCKVCTMSFAQLSELHKHNETHPGVKQYSCKICNMEFSKRKNLTLHKQHHTGRNIHNKCRYCGNDCPDTERLQEHIKKHLGDDIQECEFCEIPFAHLIDLNLHISRVHNVNPLRWQCRICSKICSSAGEIMQHNRVMHAGEKPYKCNDCYRSFALLHSLVNHKVVHSGQKDFKCEYCGKGFSYASYLKMHIRTHTGERPYICQFCPKTFSRLANLHEHKKQHSCKTGRPYTCEICGKGYTSISSINKHKLLHNGIKKFQCNICSKSYTQKAHLDRHKYSHNIRLFTCNICNKEFKSPFALTRHRKIVHGINKTQDKIEGMIREVSGETNSSEHGIDNEYYDISYVNFENVGKEEEVEEENYDFCNKNANENNEVEELEDNEISKNVSKEENKYEDETDIYQIDDNNDDEEAAIRFLVDYE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00234187;
- 90% Identity
- -
- 80% Identity
- -