Bdis007455.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bombylius discolor
Gene Symbol
-
Assembly
GCA_939192785.1
Location
CALNDV010000547.1:49376-51967[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.0016 0.093 13.2 0.4 1 23 70 93 70 93 0.94
2 20 0.041 2.3 8.8 0.0 2 23 98 120 97 120 0.95
3 20 0.0064 0.37 11.3 5.8 1 23 126 149 126 149 0.97
4 20 0.0015 0.086 13.3 0.3 1 23 156 179 156 179 0.91
5 20 0.00013 0.0074 16.6 2.7 1 23 183 205 183 205 0.97
6 20 0.019 1.1 9.8 0.9 3 23 246 266 245 266 0.97
7 20 0.14 8.2 7.1 0.4 1 23 272 294 272 294 0.96
8 20 0.24 14 6.3 0.3 5 23 365 383 362 383 0.93
9 20 6.1 3.5e+02 1.9 2.9 1 23 410 433 410 433 0.94
10 20 1.3e-05 0.00073 19.8 1.2 1 23 439 461 439 461 0.98
11 20 0.0003 0.017 15.5 5.2 1 23 467 489 467 489 0.97
12 20 0.42 24 5.6 2.3 2 23 497 518 496 518 0.97
13 20 0.015 0.86 10.2 0.1 2 23 525 547 524 547 0.95
14 20 0.032 1.8 9.1 0.5 2 23 555 577 554 577 0.95
15 20 0.0011 0.066 13.7 1.7 1 23 583 605 583 605 0.96
16 20 5e-08 2.9e-06 27.4 1.4 1 23 611 633 611 633 0.99
17 20 7.2e-06 0.00042 20.6 2.7 1 23 639 661 639 661 0.97
18 20 0.00015 0.0086 16.4 0.3 1 23 669 691 669 691 0.97
19 20 6.8e-06 0.00039 20.7 3.1 1 23 697 719 697 719 0.96
20 20 1.1e-05 0.00063 20.0 2.5 1 23 724 747 724 747 0.95

Sequence Information

Coding Sequence
ATGTCAGAACCATCATCTTGGTATGCTCATCTTGAAAAAGCTCgagaagaattagcagaaaactatgatgatgatgatgatgatgaACAATATAAAAGAGTAATTGAGACTACAACAACAATTGATTCAATACCATCATATGGTGGTGGTCTTCAAGAATCACATGATATTGATAATAATTGTGAAGTATTTTATATTATACCACGACATAAATGCAATATTTGTAATGAAATATTTAATGTTACTGAACAATTATCAGAACATTTAAATGATATTCATACACCAAAAGATCAATGTTTATTATGTGGTGAAATATTTGATATATCATTAACGTTAATTGAACATATGAAAAATGAACATATAAATATAAATCCATACCGTTGTAAATATTGTGCAAGAAGATTTTCAAATCGTCATTTAATGTCACAACATTATAAATATTTACATGATATATTagaaaaaccatatgaatgtgatatatgtggtatatcatttttaacattatatgatttacaaaatcataAATCAGATAAACATAATAAAATATTTAATTGTCCATATTGTGTTAAATGTTTTGAAAAAAGTAATGAATTAAAATATCATTTAAATATTCATGTTCATCCAGAAAAAAATATTGATAAAAATTTAAATGAATTTGATGTTATTACATTAGTAGATACAATAACACATGATAATATTAAATTAGAATGTAAAGAAACAATAAATATTGAACATTGTTATATATGTGGTAAATCTTTACAAATAAATGAAAATTTTAATGAACATTTACAAGTTCATAAAGATGAAAATTTTTTTGAATGTCCAGATTGTTATAGTTTATATGAAGATTTTAATGAATTTATAAAACATATGGATTATCATTCAAAATTTAAAATAAAAAATAAAGTAAAATTATCAAGTGTTAAGGTTGAAACAACAACAACATCTGAATTTATACCAAAAATAAATTGTGGATTTATAACACCACCACCTTCTGAATCATCAGAAATAATAAGACCAACAACAACAGTAACAGAATTAATAGAAAATGATAATGATATAAATAAAAATACATTTGAAAAAATTTGTATCTTATGTAAAATGATATTTCGTAATATTGAAGAATATGATAAACATATGAAATATCATAATAAAACAATGATATTACGTAATACTGGACCATTAGGTACAATATCATGGAATAATAAATTACATAAATCATATCCATTTTGTTGTAGACTATGTAAACGTTATTTTGTTCTTGGTACATCACTTTTATTACACAATAAAACAATTCATAATGAATTAAAACCAtataaatgtaaagtatgtacaatgtcatttgctcaattatctgaattacgtaaacataatgaaacacatcctggtgttaaacaatattcatgtaaaatatgtgatatgaaattttcaaaacgtaaaaatttaacattacataaacaacatcatacaggaagaaatgtacataataaatgccgttattgtggtagtgattgtccaaatactgaacgtttacaagaacatgttaaaaaacatttaggtgataatatacaagaatgtgaattctgtgaaataccattcgctcatttaattgatttaaatttacatattagccgtgtacataatgtaaatccattacgatggcaatgtagaatttgttcaaaaatatgtagttcagctggtgaaataatgcaacataatcgtgttatgcatgctggtgaaaaaccatataaatgtaatgaatgttataaatcatttgcattacttcatagtttagttaatcataaagttgttcattctggaaaaaaagattataaatgtgaatattgtggtaaaggttttatttattcatcatatttaaaaatgcatattcgtacacatactggtgaaagaccatatatatgtcaatattgtccaaaaacattttcacgtttagctaatttacatgaacatcgtaaacaacatttatgtataacaggaagaccatatacatgtgaaatatgtggtaaaggttatacatcaatatcaagtataaataaacataaattattacataatggtattaaaaaattccaatgtaatatatgttcaaaatcttatacacaaaaagcacatttagaacgtcatgaatattcacataatattggttcatttatttgtacaatatgtaataaaaaatttaaaagtccttttacattaacacgacataaaaaaaatatTCATGGTATTGATAAAACACAACATAAAATTGAAGGAATGATTTGTCAAGTTGTAGAGGAAACAAATAAAATTGAGAATAATGATGTCAATGATATTAATTATGTTAATTATGTTAATGATAGTGATAATTTTGAAAATGTTGAAAATGAGGAAGAGGTAGTTGAGGAGAATGATGATTTTTTCAATGAAAATTCAAGTGTATATATTGAAGGAGAAGAAGTAGAAGTAAATGAAATTTCAAAAAATGTTTCAATAGAAGAAAGTAAATTAGAAGATGAAACTGATATTTATCAAGTGGACAACAATGATGACGATGAGGAGGCTGCTATTCGTTTTTTAGTTGATTATGAATAA
Protein Sequence
MSEPSSWYAHLEKAREELAENYDDDDDDEQYKRVIETTTTIDSIPSYGGGLQESHDIDNNCEVFYIIPRHKCNICNEIFNVTEQLSEHLNDIHTPKDQCLLCGEIFDISLTLIEHMKNEHININPYRCKYCARRFSNRHLMSQHYKYLHDILEKPYECDICGISFLTLYDLQNHKSDKHNKIFNCPYCVKCFEKSNELKYHLNIHVHPEKNIDKNLNEFDVITLVDTITHDNIKLECKETINIEHCYICGKSLQINENFNEHLQVHKDENFFECPDCYSLYEDFNEFIKHMDYHSKFKIKNKVKLSSVKVETTTTSEFIPKINCGFITPPPSESSEIIRPTTTVTELIENDNDINKNTFEKICILCKMIFRNIEEYDKHMKYHNKTMILRNTGPLGTISWNNKLHKSYPFCCRLCKRYFVLGTSLLLHNKTIHNELKPYKCKVCTMSFAQLSELRKHNETHPGVKQYSCKICDMKFSKRKNLTLHKQHHTGRNVHNKCRYCGSDCPNTERLQEHVKKHLGDNIQECEFCEIPFAHLIDLNLHISRVHNVNPLRWQCRICSKICSSAGEIMQHNRVMHAGEKPYKCNECYKSFALLHSLVNHKVVHSGKKDYKCEYCGKGFIYSSYLKMHIRTHTGERPYICQYCPKTFSRLANLHEHRKQHLCITGRPYTCEICGKGYTSISSINKHKLLHNGIKKFQCNICSKSYTQKAHLERHEYSHNIGSFICTICNKKFKSPFTLTRHKKNIHGIDKTQHKIEGMICQVVEETNKIENNDVNDINYVNYVNDSDNFENVENEEEVVEENDDFFNENSSVYIEGEEVEVNEISKNVSIEESKLEDETDIYQVDNNDDDEEAAIRFLVDYE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00235220;
90% Identity
-
80% Identity
-