Bdis003049.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bombylius discolor
Gene Symbol
ham
Assembly
GCA_939192785.1
Location
CALNDV010000171.1:32673-54088[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 0.18 10 6.8 0.8 1 22 307 328 307 330 0.89
2 9 0.00057 0.033 14.6 0.5 1 23 337 360 337 360 0.94
3 9 1e-07 5.8e-06 26.4 1.6 1 23 366 389 366 389 0.98
4 9 1.6e-06 9.1e-05 22.7 1.7 1 23 395 417 395 417 0.95
5 9 3.9e-05 0.0023 18.3 5.0 1 23 423 445 423 445 0.99
6 9 0.0012 0.071 13.6 3.5 2 21 453 472 452 477 0.94
7 9 6.2e-09 3.6e-07 30.2 1.3 1 23 824 846 824 846 0.99
8 9 4.8e-07 2.8e-05 24.3 1.7 1 23 852 875 852 875 0.97
9 9 4.3e-05 0.0025 18.2 6.8 1 23 881 903 881 903 0.99

Sequence Information

Coding Sequence
ATGTCAGACACCGTAGGAAGCAGTGGTGACGAGTACGAATATGGTATACCGTCCAGTCTTCAAGTAATACCAATTGatttagataaaaatagcaataatagcaatagaagcaataataataataataaaaataatttacatgataatatacaaaattattattatcataataatcaacaatatcatcatcatcatcatcatcatcattcacatatgatcacatcagtaccttcattatttaatacagcaacaacaacaacatcagcatcatcagtatcagcagaatcattaacaacaacaacaacacgattagaacatcaatgtaataaattacaaaatcgtaatacatcaagaaattatctaacaacagaaatggcatcaagattacaaaatgataataataTAAAATTTGATTTAGATATTAAAGATAATGGTGTTTATACAAATGTTTTATTACATCGTGGTACACGTTTGGGTCCATTCTCAATGAAATGGAGTAATAAACCGACAGATAGAAATTATGCATGGGAGGTTGTTGCTGGATCAAATGTTCGAGGTTGGTTGGAACCAGTTGTTGAATCAGAAAGTTGGTTAAGAAAATTACGTTTTCTGGTGGAAGGCAATAATATTGAAATTGCAAATTTACAACATTTTTTAGCTGCAGGTTATTTGTGGTTCGAAGTACAAAAGGATATTCCGGCAGGAACTGAAATAATAGCGGGACCAAAGACACCTTTACAATTAGGTGATATTTTCAATAATGGAACATTTGAAAATAAAAATCCTAAAAGAAGTGAATCACAAAATTCTATTCTAAATAGAAATGAAGATGATGAATTAATTTCAAATAATTTAGACAATAATAAATCAATAAATAATCAACAAGATCAAGATTCTGATGATGAAGAAGGTATAAATTTTAGATGTAATCTTTGTGAAAGACAGTGTCGTGATATTGATAGTTTGGATTATCATTTAGTTGCTGAACATCATTTTCCAAAAGACAATTTTAGATGTGAATTGTGTCCAAAAAGTTATTATTATCGTCCTTCATTATTAAGACATCGTGCTCTTGTACATGGTGAATTAAGAAAATATCCTTGTGAAAATTGTACAAAAGCATTTTGTGATCCATCAAATTTACAACGACATATTCGTTCACGTCATAGTGGTGCAAGAAGTCACGCTTGTCCAGAGTGTGGTAAAACTTTTGCAACATCATCTGGACTTAAACAACATACACATATACATTCCTCAGTGAAACCATTTCAATGTGAAGTTTGTTTTAAAGCATACACACAATTTTCAAATTTATGTCGGCATAAACGTATGCATGCTGATTGTCGAATGCAAATTAAATGTACGAAGTGTGGTCAAAGTTTTAGTACTGTGACATCATTATCAAAACATAAACGTTTCTGTGATTCTCATCATTCTCATCAACAGCAACAAGTGCATCCACCACCCCCACCACAATCAAATCCAATCGGAGTAGTACCACCATCCCCAATGACGACTCCACCAAATCCTTTTTTCATATTTCGTGGACCAACACCATTTTTTCCATCAAGTTTTTCTCCTTATGGATTTCAAGGAATATTTCCACCAAGTCCTACACAGACACCAGCTTTTCCTCTTTTTTCATTTTCTAAACCAAACATAGATGTGCCTCTTATGGATAAAGAAAGGATATCACCACAAAGAAATACAAGTAGCAGTTTAGGTGGAGAATCATACATTAGTCCATTAGTTTCTGATGAGCGTAGATTAAATCATATGATGCCATCACCAACAAGATCAATAGCAATGTCTTCACAAGAGAGTAATTGTAATATTGATATGAAAATTAGTCAACTTTCTCCTCGCAGTAGACACTCAAGAAGTCCGGAAGGAAATTCTTCAAATTTAATGTATTCCGAAAGAGATGAATCTTTCAGGGATGATTCCAAAGAAATAAAACAAGAAAGACAAACACCTTTGGAAGATAAGGGATCAATAAATGTGACAAGGACACCATCACCGAACAACGAAGAAACACGAACTTCTCCAGTACATACCGAACAGCCACTTGATCTTTCAGTGACTCGGAGTCGTAAAAGAAGTCGTAGTTTGACACCAGAGCCTTGTAGTAATAAACATGATGTACCATCACATCAATCATTTCAGGCAAGTCGAACACCATCAGTATCACCGGGATTAACACCTTCACCATCACCTCCTGGACCACCAATGGCATGTCCTAGACCAATCCATCCTATATTATTAGAAGCAATTTATCGACCAACTACCGGATTAAGTGCAGCCTTTCAACGTCCCTTTCCTTTTTTAGGGCCAATGGGCGGTCGCGGACCAGGATTTGATCACATACTACATCGGAATGGGCCGTTTCCGCCCAAACCATTTCATGAAACCCTAATGGTAACTGGAGGTCTAACAGGAGCATTAGCCACAACTAAAATTAAGGATCGTtatacatgtaaattttgtggtaaagtatttccacgttcagcaaatttaacacgtcatttaagaacacataccggtgaacaaccatataaatgtaaatattgtgaacgatcattcagtatatcaagtaatttacaacgacatgttagaaatattcataataaagaaagaccatttaaatgtcatttatgtgatagatgttttggtcaacaaacaaatttagatcgtcatttaaaaaagcatgatactgatgcaaaTGGTTTAAGTTTAAGTGTTGGTGATTCACCATCATCAAATGAAGCTGATAGAGAAGATACATATTTTGATGAAATACGTTCATTTATGGGTAAAGTTACTTATAATAATGGTATTTATACACCAATTAGTATAAGTACTGGTGAAAATGAAACTGAAGATGGTAGTAGTGATATTGACAACGAAATAATTAATGAAAAGGATAATATAACGAATAACAACGAACATGATGCTGCCATCGAAGTTTCAACATAG
Protein Sequence
MSDTVGSSGDEYEYGIPSSLQVIPIDLDKNSNNSNRSNNNNNKNNLHDNIQNYYYHNNQQYHHHHHHHHSHMITSVPSLFNTATTTTSASSVSAESLTTTTTRLEHQCNKLQNRNTSRNYLTTEMASRLQNDNNIKFDLDIKDNGVYTNVLLHRGTRLGPFSMKWSNKPTDRNYAWEVVAGSNVRGWLEPVVESESWLRKLRFLVEGNNIEIANLQHFLAAGYLWFEVQKDIPAGTEIIAGPKTPLQLGDIFNNGTFENKNPKRSESQNSILNRNEDDELISNNLDNNKSINNQQDQDSDDEEGINFRCNLCERQCRDIDSLDYHLVAEHHFPKDNFRCELCPKSYYYRPSLLRHRALVHGELRKYPCENCTKAFCDPSNLQRHIRSRHSGARSHACPECGKTFATSSGLKQHTHIHSSVKPFQCEVCFKAYTQFSNLCRHKRMHADCRMQIKCTKCGQSFSTVTSLSKHKRFCDSHHSHQQQQVHPPPPPQSNPIGVVPPSPMTTPPNPFFIFRGPTPFFPSSFSPYGFQGIFPPSPTQTPAFPLFSFSKPNIDVPLMDKERISPQRNTSSSLGGESYISPLVSDERRLNHMMPSPTRSIAMSSQESNCNIDMKISQLSPRSRHSRSPEGNSSNLMYSERDESFRDDSKEIKQERQTPLEDKGSINVTRTPSPNNEETRTSPVHTEQPLDLSVTRSRKRSRSLTPEPCSNKHDVPSHQSFQASRTPSVSPGLTPSPSPPGPPMACPRPIHPILLEAIYRPTTGLSAAFQRPFPFLGPMGGRGPGFDHILHRNGPFPPKPFHETLMVTGGLTGALATTKIKDRYTCKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKERPFKCHLCDRCFGQQTNLDRHLKKHDTDANGLSLSVGDSPSSNEADREDTYFDEIRSFMGKVTYNNGIYTPISISTGENETEDGSSDIDNEIINEKDNITNNNEHDAAIEVST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00235256;
90% Identity
iTF_00235256;
80% Identity
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