Basic Information

Insect: Bombylius discolor
Gene Symbol: -
Assembly: GCA_939192785.1
Location: CALNDV010000318.1:186367-188887[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.5e-06 8.4e-05 22.8 1.8 2 23 258 279 257 279 0.96

2 12 4.2e-06 0.00024 21.3 2.2 1 23 285 307 285 307 0.99

3 12 2.8e-06 0.00016 21.9 0.4 1 23 313 335 313 335 0.98

4 12 0.002 0.12 12.9 0.3 1 23 341 364 341 364 0.92

5 12 0.012 0.68 10.5 2.7 1 23 372 394 372 394 0.97

6 12 5.3e-07 3.1e-05 24.1 1.2 2 23 403 424 402 424 0.96

7 12 0.00016 0.0091 16.4 1.2 1 23 431 453 431 453 0.99

8 12 0.0039 0.22 12.0 2.7 1 23 465 487 465 487 0.98

9 12 3e-05 0.0017 18.6 0.3 1 23 495 517 495 517 0.98

10 12 0.0041 0.24 11.9 1.8 1 23 522 545 522 545 0.92

11 12 0.018 1.1 9.9 0.1 2 23 554 576 553 576 0.93

12 12 0.0011 0.063 13.7 0.4 2 23 582 603 582 603 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.5e-06	8.4e-05	22.8	1.8	2	23	258	279	257	279	0.96
2	12	4.2e-06	0.00024	21.3	2.2	1	23	285	307	285	307	0.99
3	12	2.8e-06	0.00016	21.9	0.4	1	23	313	335	313	335	0.98
4	12	0.002	0.12	12.9	0.3	1	23	341	364	341	364	0.92
5	12	0.012	0.68	10.5	2.7	1	23	372	394	372	394	0.97
6	12	5.3e-07	3.1e-05	24.1	1.2	2	23	403	424	402	424	0.96
7	12	0.00016	0.0091	16.4	1.2	1	23	431	453	431	453	0.99
8	12	0.0039	0.22	12.0	2.7	1	23	465	487	465	487	0.98
9	12	3e-05	0.0017	18.6	0.3	1	23	495	517	495	517	0.98
10	12	0.0041	0.24	11.9	1.8	1	23	522	545	522	545	0.92
11	12	0.018	1.1	9.9	0.1	2	23	554	576	553	576	0.93
12	12	0.0011	0.063	13.7	0.4	2	23	582	603	582	603	0.96

Sequence Information

Coding Sequence: ATGTTTCTAAAATTTAATTCAACTATTTGTCGTGTTTGCTTGGAACAAGAAGGAAAAGTTTCATTATTTGATAACTGTGAAATTGCTGAAGAATTTCGTTTTTGTACACTATTAGAGGCATCAGAAGATGATGAACTACCACCAAAACTATGTACAAAATGTTTTAAGTGTTTAAAAGTTGCTCATAATTTTAAAACAAAAGCAATATCATCAGATACATATTTACGTAAATTTTTATCATCATTAAATGCAAAATTTGGCAATGTTGTTGCTAATAATCGTAGTATATTAAATGTTGATTTGAGTGAATTAAATTCATTATTATCATCAGATGATCAGGAATATTATGAGAATATTGTAGAAAAATCAACAACAACAACAAAAGCAGAAGCAAGAACAATAGAAACAACACAAAATGTTATTGAACAGGTATCAACAACAAGAAAATCAAAAAAGCCAGCATTTAAAATCGAAATAATACAACTTCAAGATAATGAAGATGATAATGTTGAAATGGTAGATTATGAAGATATTATTACATACAAAGATAATGAAGACGATGATTATACAAGTAATGAAAGAAATAATGAAATTCAAAAAGATGATATCGAAATAAGTGAAATTATTGAAGAAGATTCTTGTACAAATGATCAAGAAATAACTGAAAGTGAAATAACAAAAAAATCATCATCTACTGAAGAAGTGGTTAATCGAAAGAAGAAATATGATTCAAAAATAGCTGAAGAAATTTCtacatcaaataatccatgtatttgtgttgaatgtaataaaacattttcatcaaaagcaaatttaatgcgtcatgttttaacacataataatgcaaaaccatatcaatgtacagtttgtggtgattgttttacacaaaatggttcattaaaaagtcatatgttacgacatacaggtgaacgtccgtatagttgtgatgtttgtggtaaatcttttacacgtttacgtgtattaagaattcatgaaaggattcatactggagataaaccatatgaatgtagtcaatgtggtgataaatttCGAGTTAAAGAAGGATTAAGGCGTCATAATGCAGTACAACATTCAATTGGTATATTAAAAGAATATGATTGTCAAATATGTAAACGTAAATTAAGTTCAAAATGTGCACTTGATACACATTTAAAATTACATCGTGGTGAAAAAAAACATAATACATCATGTAATATATGTAATAAAACATTTTCATCAAAATATTCATTACAAAATCATTTAGAAATACATAAAAGAACTAAAAAAAAATATCAATGTAAACAATGTAATGAAGAATTTCAAACAAGATCATTATATATAATTCATGTGCAAAAACATAATGATACTATAAATTCAGAATCAACAATTAAATTTATATGTGAAATATGTCATAAAATTATATATCGTAAATTTAAATTATATCAACATTTATTAACACATGAAAATAAAGAAGATTTAAATTATCAATGTAGAATATGTGATGAAAAATTTACAGTCAAAGAAAATATTTTACAACATATACGAGCACATAACAATTTTCTACATAAATGTAATGAATGTAATATTGCATTTAATATAAAACGTGATTTAAAATTACATCGTGTTAATTTTCATAAAGAAACTGTTGAAGATTTAAATAAATGTGAAGAATGTGATATAATGTTTGTAAGTGGTATCGATTTAAATGTTCATTTCGTAACAAAACATGATGAAATTAATAATGAATGTAAGGAATGTGGAGAATTATTTAAATCAAATAGATTATACAAAGAACATTTATTAGAACATGATTTAATTGAAATAAATTGTAAAAAGTGA
Protein Sequence: MFLKFNSTICRVCLEQEGKVSLFDNCEIAEEFRFCTLLEASEDDELPPKLCTKCFKCLKVAHNFKTKAISSDTYLRKFLSSLNAKFGNVVANNRSILNVDLSELNSLLSSDDQEYYENIVEKSTTTTKAEARTIETTQNVIEQVSTTRKSKKPAFKIEIIQLQDNEDDNVEMVDYEDIITYKDNEDDDYTSNERNNEIQKDDIEISEIIEEDSCTNDQEITESEITKKSSSTEEVVNRKKKYDSKIAEEISTSNNPCICVECNKTFSSKANLMRHVLTHNNAKPYQCTVCGDCFTQNGSLKSHMLRHTGERPYSCDVCGKSFTRLRVLRIHERIHTGDKPYECSQCGDKFRVKEGLRRHNAVQHSIGILKEYDCQICKRKLSSKCALDTHLKLHRGEKKHNTSCNICNKTFSSKYSLQNHLEIHKRTKKKYQCKQCNEEFQTRSLYIIHVQKHNDTINSESTIKFICEICHKIIYRKFKLYQHLLTHENKEDLNYQCRICDEKFTVKENILQHIRAHNNFLHKCNECNIAFNIKRDLKLHRVNFHKETVEDLNKCEECDIMFVSGIDLNVHFVTKHDEINNECKECGELFKSNRLYKEHLLEHDLIEINCKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00235234;
90% Identity: -
80% Identity: -